Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 >seq2 Length=39559433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || |||||||| | || || || || || || |||| Sbjct 31556143 CATC-CCTCCACGAAGACGGAGGACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAAT 31556201 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 ||||||| ||| |||| |||| ||| ||||| |||| || | | |||||| || | Sbjct 31556202 CGGCCAATGTGCGCCCATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAG 31556261 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCT 39665 || | ||| || ||||| |||||| || || |||| | ||||| | ||| Sbjct 31556262 GTGGGATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCG--ATGGTGTCAGAGCT 31556319 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||| ||| || || || || || | ||| || || ||||||||||| Sbjct 31556320 CTCCACTTCCAGAGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 31556373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369549197196