Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 114 5e-20 seq5 87.8 7e-12 seq6 84.2 9e-11 seq4 84.2 9e-11 >seq3 Length=38925377 Score = 114 bits (126), Expect = 5e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 |||||||||||||| |||||||||| || ||| |||| || ||| || | || Sbjct 37123548 GAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAAATTGCTGAAGCTTACCTAGGA 37123607 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || | || | |||| || | |||||||| ||||| ||||||||| | || |||| Sbjct 37123608 TCAACTGTGAAGAATGCTGTTGTCACTGTTCCTGCTTACTTCAATGATTCCCAGAGGCAG 37123667 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 ||||| || ||||| || |||||| ||| | |||||| | || || || ||||| || Sbjct 37123668 GCAACCAAGGATGCCGGTGTTATTGCGGGTCTTAATGTTATGCGCATCATCAATGAGCCA 37123727 Query 451427 ACAGCAGCTGCTCTAGCATATGGACT 451452 ||||| ||||| | || ||||| || Sbjct 37123728 ACAGCTGCTGCAATTGCTTATGGTCT 37123753 Score = 89.7 bits (98), Expect = 2e-12 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 451974 AACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAG 452033 |||| || |||||| | || |||||||||||||| ||||| |||||||| || || |||| Sbjct 37124278 AACTCTGCAAGAGCATTAACCCTGATGAAGCTGTGGCATACGGTGCTGCTGTCCAGGCAG 37124337 Query 452034 CTATTCTAACAGGTTCAGATG---ATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAA 452090 |||| || | || ||| | |||| || | |||| |||| | | ||||| | Sbjct 37124338 CTATCCTTA---GTGGAGAGGGGAATGAGAAGGTGCAAGATCTTCTCCTTCTTGATGTGA 37124394 Query 452091 CACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 | || || |||||||| | || || ||||| ||| | |||||| Sbjct 37124395 CTCCACTGTCTCTTGGTCTCGAGACTGCTGGAGGAGTCATGACT 37124438 Score = 87.8 bits (96), Expect = 7e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || || ||||| || ||||| ||| || |||| | ||| | | || Sbjct 649783 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 649724 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| |||||||||||||| || || || || || || || ||||| || Sbjct 649723 GTGATTACTGTTCCAGCTTATTTCAATGACGCTCAGCGTCAGGCTACCAAGGATGCTGGT 649664 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | || ||||| | |||| | |||| || |||||||| || || || ||||| | Sbjct 649663 CGCATCGCTGGGCTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCCGCTCTGTCT 649604 Query 451445 TATGGA 451450 |||||| Sbjct 649603 TATGGA 649598 >seq5 Length=31082981 Score = 87.8 bits (96), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || || || || ||||||||||| ||||| || |||||| |||||||| Sbjct 13158739 GCAGTGATCACAGTCCCTGCATATTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 13158680 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| || | ||||| || || || ||||| || || || || || | Sbjct 13158679 GGCCGGATTGCTGGGTTGGAAGTTCTCCGTATCATAAATGAGCCCACTGCTGCATCTTTG 13158620 Query 451442 GCATATGG 451449 |||||||| Sbjct 13158619 GCATATGG 13158612 >seq6 Length=34615992 Score = 84.2 bits (92), Expect = 9e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || || || || |||||||| || || || || Sbjct 31537985 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGAGGTCGAGTCCTCG 31537926 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | || || || || || ||||| ||||| ||||||||||| Sbjct 31537925 GACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAG 31537866 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || ||||| || || || || |||| ||||| || Sbjct 31537865 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTAGGACCCTGGCTGATTACAAC 31537806 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | || || ||| | || | ||||| || || Sbjct 31537805 ATTCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGACTTAGGGG 31537762 >seq4 Length=33711903 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || ||||| || || || || | || ||||| || || Sbjct 30264283 ATGCAGATATTTGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCC 30264342 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| || ||||| || || ||||| || || Sbjct 30264343 GATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 30264402 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | || || || ||||| ||||| | ||| | ||||||||||| Sbjct 30264403 CAGCGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTTGCGGATTATAAC 30264462 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 30264463 ATCCAGAAGGA 30264473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718096233296