Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3 217 1e-50 seq11 111 1e-18 seq2 89.7 4e-12 seq5 87.8 1e-11 >seq3 Length=38925377 Score = 217 bits (240), Expect = 1e-50 Identities = 687/1059 (65%), Gaps = 12/1059 (1%) Strand=Plus/Minus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 |||||| ||||| || ||||||||||| || | ||||| ||| || ||||||| Sbjct 37124676 CGGCAGAAACATTCAGGATACCATTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 37124617 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || || | ||||| ||||| || || | |||| | || || ||| || || Sbjct 37124616 CTCCCCTTGGGGCAGGAGGGATACCAGACAGCTCAAATTTGCCAAGGAGATTGTTGTCCC 37124557 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 | || | | | |||||||| | | ||||| || | | || ||||| || | Sbjct 37124556 TGGTCCGTGTCCTCTCACCCTCATAGACCTGGATCAACACACCGGGCTGGTTATCGGAGT 37124497 Query 517437 AAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 | || | || ||| || || |||||| || ||||| || || | | Sbjct 37124496 AGGTGGAGAAGACTTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGGGATGAGGACAG 37124437 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||| | || || || || || | ||||||||| || ||||| ||||||| |||| || Sbjct 37124436 TCATGACTCCTCCAGCAGTCTCGAGACCAAGAGACAGTGGAGTCACATCAAGAAGGAGAA 37124377 Query 517557 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 || ||| | || |||| | ||| ||| |||||||| || | ||||||||| | Sbjct 37124376 GATCTTGCACCTTCTCATTCCCCTCTCCACTAAGGATAGCTGCCTGGACAGCAGCACCGT 37124317 Query 517617 ATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 517674 |||| |||||||||||||| |||| | || || |||| || |||||||| || | Sbjct 37124316 ATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCATTGAAGAAGTC 37124259 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||||| || ||| | || || | || ||| || ||||| | |||| || || Sbjct 37124258 CTGCAGAAGCTGCTGAACCCTGGGGATTCTAGTTGAACCACCAACGAGGACAACGTCGTG 37124199 Query 517735 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 || ||| | || |||| |||| |||| | || || || || || | | | Sbjct 37124198 GACG-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATGCACT 37124140 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAAT 517853 || || | || ||| || || || | ||||| || | ||| || ||| Sbjct 37124139 TCCTGAAGAGATCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATGGTGGAATAGAAAT 37124080 Query 517854 CAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCAC 517913 ||| || || || | ||||||| |||||| |||||||| | | || || || | | Sbjct 37124079 CAACGCCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGTGGACGAGAGGGTCC 37124020 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAAT 517973 || || | |||||||| ||| ||||| || | || || | | | | | | || Sbjct 37124019 TCTTTGCCCTTTCACATGATGTTCTTAGCCTCCTCAAAGCCCTGGGGTTTCCACTGATAT 37123960 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 | | |||| ||||||||||| |||| ||| | | || || || || || || | Sbjct 37123959 CCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACCAGGCGGTTGTCGAAGT 37123900 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 | || || || | | || | || | || ||| | || | |||| || || |||| Sbjct 37123899 CCTCCCCACCAAGGTGGGTGTCACCGGCTGTTGCTTTCACCTCAAAAATACCCTCCTCAA 37123840 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 | | || | |||||| || |||||||| | |||||||| || || ||| | | Sbjct 37123839 TGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAAATGAGCACGTTCTTCT 37123780 Query 518154 CTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 | | ||| || || ||||||||||| |||| |||||||| ||||| |||| Sbjct 37123779 CACCAACACTAGTTGCCTTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTGGCTCAT 37123720 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 | || || | || |||||||||||| ||||| || ||||| || || || || || | Sbjct 37123719 TGATGATGCGCATAACATTAAGACCCGCAATAACACCGGCATCCTTGGTTGCCTGCCTCT 37123660 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | ||||| || || || ||||||||||| | ||| |||| Sbjct 37123659 GGGAATCATTGAAGTAAGCAGGAACAGTGACAACAGCAT 37123621 >seq11 Length=28494620 Score = 111 bits (122), Expect = 1e-18 Identities = 523/822 (64%), Gaps = 14/822 (2%) Strand=Plus/Minus Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 |||||| | |||||| || || || ||||| ||||| ||||| || ||||| | |||| Sbjct 28218685 GGTCATGACACCACCAGCAGTCTCCAAACCGAGAGAGAGAGGGGTAACATCCAACAGGAG 28218626 Query 517555 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | || | || || | | |||| || || || || || | ||||||||| Sbjct 28218625 GAGGTCCTGGACCTTCTCGTTGCCCTCACCACTCAGGATGGCAGCCTGGACAGCAGCACC 28218566 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 517674 ||| |||||||| ||||| || || | | | || | || ||||||||||| | Sbjct 28218565 ATAAGCAACAGCCTCATCTGGGTTGATGTTCTTGCAAAGCTCCTTGCCATTGAAAAAGTC 28218506 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||| || || ||| | || || | || || || ||||| | |||| ||||| Sbjct 28218505 CTGAAGGAGCTGCTGCACCCTCGGGATCCTAGTGGAACCACCAACAAGAACAACATCATG 28218446 Query 517735 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 || ||| | || |||| || | |||| | || || || || || | || | Sbjct 28218445 AACA-GTGCTCTTGTCCATCTTAGCATCCCTGAGGCACTTCTCCACAGGCTCCATACACT 28218387 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA- 517852 || || | || || || || ||| | || | || | || | || || Sbjct 28218386 TCCTGAAGAGATCCATGTTGAGCTCCTCAAATCTGGCGCGGGTGATGGTTG-AGTAGAAG 28218328 Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 ||||| || || | | ||||||| ||||| || || || | | || || || | Sbjct 28218327 TCAATGCCCTCATAGAGTGAATCAATCTCAATGGTGGTCTGGGCAGTGGAGGAGAGGGTC 28218268 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 | || || | ||||| |||||||| | || | | || | | | ||| | | | Sbjct 28218267 CTCTTCGCCCTCTCACAAGCTGTCCTCAACCTCCTCAGAGCCCTGG--GGTTGCCAGTGA 28218210 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 || | || | || |||||||| |||| ||| | | || | || || |||| Sbjct 28218209 TGTCCTTCTTGTTCTTCCTCTTGAACTCTTGCACAAAGTGGTTGACCATGCGGTTGTCAA 28218150 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 ||||||||||||| | | || | || | || || | || | || | || || | Sbjct 28218149 AATCTTCACCTCCAAGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCT 28218090 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | | || | |||||| ||| ||||| || | ||||| || || |||||| Sbjct 28218089 CAATGGTAAGGAGGGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCT 28218030 Query 518151 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || | ||| || || ||||||||||| |||| ||| || ||||| || | Sbjct 28218029 TCTCACCAACACTGGTGGCCTTCTTGTCAAGACCATAGGCAATAGCTGCGGCAGTCGGCT 28217970 Query 518205 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 518264 |||| || || | || || || ||||||||||| ||| ||||| || ||||| || | Sbjct 28217969 CATTGATGATACGCATGACGTTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCC 28217910 Query 518265 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || || || || || || ||||||||||| | ||| |||| Sbjct 28217909 TCTGGGAGTCATTGAAGTAGGCAGGAACAGTGACAACAGCAT 28217868 >seq2 Length=39559433 Score = 89.7 bits (98), Expect = 4e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 518188 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 518247 ||||||||||||||| ||||| || || ||| |||| ||| |||||||| | || || Sbjct 36487358 AGCAGCAGCAGTTGGCTCATTGATGATCCTCTGGACATCAAGTCCAGCAATGCGACCAGC 36487417 Query 518248 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||| || || || || | || | ||| |||||||| || ||||| ||||| ||||| Sbjct 36487418 ATCCTTGGTCGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTAATCACGGC 36487474 >seq5 Length=31082981 Score = 87.8 bits (96), Expect = 1e-11 Identities = 145/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| || || || |||| ||||||| ||| | | |||| |||| | ||| Sbjct 13158549 ACATCAAATGTGCCTCCTCCCAGGTCAAAAACAAGAA---TGGTTTCATTGTTCTTCTTT 13158605 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 | ||| ||||| || |||| |||||||| || ||||| || || | | ||| | Sbjct 13158606 T---CAAACCCATATGCCAAAGATGCAGCAGTGGGCTCATTTATGATACGGAGAACTTCC 13158662 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | |||||||| | || |||||||| || ||| |||||||| || || ||||||||| Sbjct 13158663 AACCCAGCAATCCGGCCAGCATCTTTTGTTGCTGTCCTTTGTGAGTCATTGAAATATGCA 13158722 Query 518288 GGAACAGTAATAACGGCATCAGTTACTT 518315 || || || || || || | || |||| Sbjct 13158723 GGGACTGTGATCACTGCCTTTGTGACTT 13158750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821804520472