Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 113 5e-20 >seq6 Length=34615992 Score = 113 bits (124), Expect = 5e-20 Identities = 272/407 (67%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || | || || || || ||||| || ||| Sbjct 6411380 CGGTCGAAGCGTCCCGGGCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTGGTGGCG 6411439 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || || || | | ||| | || | ||| |||||||| || ||||| |||||||| Sbjct 6411440 GCGATCACGATGACGCCGCTGTCGCCGCTGAACCCGTCCATCTCGGTGAGCAGCTGGTTC 6411499 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTCTTACCG 11679 | |||||| || | ||| ||||| | || || || | ||||| || | | || Sbjct 6411500 AGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATGCC-CGTGCCG--CGTTGCCGCCCC 6411556 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| |||| ||||| |||||| |||| | ||| Sbjct 6411557 ACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTTGGCCTTGGCCTTGTTGAAC 6411616 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || || || || ||| ||| || || || ||||||||||| | ||| | | | | || Sbjct 6411617 AGGTCGCGCACCCGCGACGCGCCGACGCCGACGAACATCTCGATGAACTCGGAGCCGGAG 6411676 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | | |||||| || | ||| || ||||| || || || || ||||| ||| Sbjct 6411677 AGCGAGAAGAAGGGCACGCCGGCCTCCCCGGCGATCGCCTTGGCCAGCAGCGTCTTCCCC 6411736 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || || || | || | || || |||| ||||||| | ||||| Sbjct 6411737 GTCCCCGGCGGGCCGACCAGCAGCACGCCCTTGGGGATCCTCGCACC 6411783 Score = 107 bits (118), Expect = 2e-18 Identities = 309/472 (65%), Gaps = 10/472 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| | |||||||| || || || | || || | |||| | |||||| ||| Sbjct 34192660 CGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGCCTGTTTGTCGCG 34192719 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619 || || |||||| || || || || || ||||| || || | |||||| Sbjct 34192720 GC---GAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTCAAGAGCTGG 34192776 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTAC 11677 ||||| ||||| || | |||||| || | | | | || || ||||| | | | Sbjct 34192777 TTGATGGTCTGCTCCCTCTCATCATTTCCC--CCTCCGAGCCCAGCGCCACGCTGCCTCC 34192834 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 |||| || ||||||||||| ||||| ||||| || || ||||| |||| |||| Sbjct 34192835 CGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGA 34192894 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | || || | || | || || ||||| ||||||| ||| ||||| | | ||| | Sbjct 34192895 ACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTCGGAGGCGG 34192954 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 || | |||||| || | ||| || |||| ||| || || || || ||||| | Sbjct 34192955 CGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAGTGTCTTGC 34193014 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGT 11917 | || || || | || |||| ||| || |||||||||||| || | || Sbjct 34193015 CGGTTCCGGGCGGGCCGACGAGCAGGCATCCCTTGGGGATCTTGGCCCCTAGCGCGGTGT 34193074 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | || || ||||||||||| || || | ||||| || || |||||| Sbjct 34193075 ACTTGTCGGGGTTCTTGAGGAAATCGACGACCTCCTGCAGCTCGAGCTTGGC 34193126 Score = 107 bits (118), Expect = 2e-18 Identities = 309/472 (65%), Gaps = 10/472 (2%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| | |||||||| || || || | || || | |||| | |||||| ||| Sbjct 34198978 CGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGCCTGTTTGTCGCG 34199037 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCTGG 11619 || || |||||| || || || || || ||||| || || | |||||| Sbjct 34199038 GC---GAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTCAAGAGCTGG 34199094 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAACGCTTCTTAC 11677 ||||| ||||| || | |||||| || | | | | || || ||||| | | | Sbjct 34199095 TTGATGGTCTGCTCCCTCTCATCATTTCCC--CCTCCGAGCCCAGCGCCACGCTGCCTCC 34199152 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 |||| || ||||||||||| ||||| ||||| || || ||||| |||| |||| Sbjct 34199153 CGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGA 34199212 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | || || | || | || || ||||| ||||||| ||| ||||| | | ||| | Sbjct 34199213 ACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTCGGAGGCGG 34199272 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 || | |||||| || | ||| || |||| ||| || || || || ||||| | Sbjct 34199273 CGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAGTGTCTTGC 34199332 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGT 11917 | || || || | || |||| ||| || |||||||||||| || | || Sbjct 34199333 CGGTTCCGGGCGGGCCGACGAGCAGGCATCCCTTGGGGATCTTGGCCCCTAGCGCGGTGT 34199392 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | || || ||||||||||| || || | ||||| || || |||||| Sbjct 34199393 ACTTGTCGGGGTTCTTGAGGAAATCGACGACCTCCTGCAGCTCGAGCTTGGC 34199444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || ||||||||||| Sbjct 933868 TGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCC 933809 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 933808 CGCTTCTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAGAAGATCCCCTCGACGCAG 933749 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| || | || ||||| || || | ||| | ||||| |||| | ||||| Sbjct 933748 GCGAAGGCCACGAGGCGCTCGGCGAAGCGCTCGCCGC-CGTCGATCCACCGCATGGCCCA 933690 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 || ||||| || | | |||||| || | |||||| Sbjct 933689 GTCAGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGC 933651 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 8272999 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCC 8273058 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| |||||||||||||| || || || || |||||||| ||||| || || Sbjct 8273059 CGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAACCCGAGAAGAAGATCCCCTCGACGCAA 8273118 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 8273119 GCGAAGGCGACGAGGCGCTCGGCGAA 8273144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975911653600