Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 136 5e-27 seq2 84.2 3e-11 >seq6 Length=34615992 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 933869 GTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCC 933810 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || ||||||||||| || ||||||||||| ||||| || || Sbjct 933809 CCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAGAAGATCCCCTCGACGCA 933750 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 933749 GGCGAAGGCCACGAGGCGCTCGGCGAAG 933722 Score = 134 bits (148), Expect = 2e-26 Identities = 279/408 (68%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | ||||| ||||| ||||| | || || | ||| | || |||||| Sbjct 34192660 CGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGCCTGTTTGTCGCG 34192719 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| |||| | ||| |||| | |||| ||||||||||| ||||| || |||| Sbjct 34192720 GCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAGAGCTGGT 34192777 Query 9310 TAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9368 | || || || |||| |||||||| | | | | | ||||| | || ||| | || Sbjct 34192778 TGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCCACGCTGCCTCCCG 34192836 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 |||||||||||||||||||||||||| || || || || | ||| | || || Sbjct 34192837 ACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGAAC 34192896 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 || || | ||||| |||||| ||||| || |||| ||| || || | | ||||| Sbjct 34192897 AGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTCGGAGGCGGCG 34192956 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || || |||||| || | || ||||| | ||| || || || || ||||| || Sbjct 34192957 CAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAGTGTCTTGCCG 34193016 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || || ||| || |||| | |||| ||| | || |||||||| || Sbjct 34193017 GTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 34193063 Score = 134 bits (148), Expect = 2e-26 Identities = 279/408 (68%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | ||||| ||||| ||||| | || || | ||| | || |||||| Sbjct 34198978 CGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGCCTGTTTGTCGCG 34199037 Query 9252 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9309 |||| |||| | ||| |||| | |||| ||||||||||| ||||| || |||| Sbjct 34199038 GCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAGAGCTGGT 34199095 Query 9310 TAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9368 | || || || |||| |||||||| | | | | | ||||| | || ||| | || Sbjct 34199096 TGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCCACGCTGCCTCCCG 34199154 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 |||||||||||||||||||||||||| || || || || | ||| | || || Sbjct 34199155 ACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGAAC 34199214 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 || || | ||||| |||||| ||||| || |||| ||| || || | | ||||| Sbjct 34199215 AGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTCGGAGGCGGCG 34199274 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || || |||||| || | || ||||| | ||| || || || || ||||| || Sbjct 34199275 CAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAGTGTCTTGCCG 34199334 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || || ||| || |||| | |||| ||| | || |||||||| || Sbjct 34199335 GTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 34199381 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 8272998 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 8273057 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | |||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 8273058 CCGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAACCCGAGAAGAAGATCCCCTCGACGCA 8273117 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 8273118 AGCGAAGGCGACGAGGCGCTCGGCGAAG 8273145 Score = 114 bits (126), Expect = 2e-20 Identities = 249/369 (67%), Gaps = 14/369 (4%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || || || | || | ||| ||| ||||||||| | | || || || || Sbjct 31291560 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 31291619 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| || || || | ||||||||||||||||| |||| | || || | | Sbjct 31291620 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 31291679 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCA-CTG-----CGTTGCTTTCCC 9368 |||||||||| ||||||||| | ||||||| | ||| | |||| |||| Sbjct 31291680 GTTTGTTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 31291733 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| || || || || || ||| || || | | || Sbjct 31291734 ACAGCATCAATTTCATCAACAAATACTATGCAAGGGGCATTCTCCTTTGCCTTCTTGAAA 31291793 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| ||||| | ||| || || || ||||||||||||||||| | | | | | Sbjct 31291794 AGATCACGAACACGGGAGGCACCAACTCCCACAAACATCTCCACAAACTCAGATCCTG-A 31291852 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 |||| || || || ||| || ||| || ||||| || ||| || | ||||||||| Sbjct 31291853 TATTGAGAAAAACGGCACACCAGCTTCTCCTGCAATAGCCTTGGCAAGCAAAGTCTTACC 31291912 Query 9548 CGTACCTGG 9556 || || || Sbjct 31291913 AGTTCCAGG 31291921 >seq2 Length=39559433 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 106466 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 106525 |||||||| | |||||| ||||| || ||| | |||| |||| | ||| || || Sbjct 38036751 ATTGATGCTAGATTGCACACAGCAGTTTCAGTGGGACTTGTGAACTCAATAATCTCCGTG 38036692 Query 106526 CACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCA 106585 |||||||||||| |||||| ||||||| || | ||||||||| ||| | || || | | Sbjct 38036691 CACAAGTTGGAAGACTTAATTGTCCCCAGGTTTTGTTGGTTACTTTTTCTATTACAAGAA 38036632 Query 106586 TCCT 106589 |||| Sbjct 38036631 TCCT 38036628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980711502880