Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1 365 5e-96 seq7 237 2e-57 seq12 120 4e-22 seq2 111 2e-19 >seq1 Length=46096743 Score = 365 bits (404), Expect = 5e-96 Identities = 712/1046 (68%), Gaps = 38/1046 (4%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| | ||||| |||||||| || ||||||||||||| Sbjct 45923518 TTTGATATTATGGACGACTGGTTAGA-AGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || ||| | |||||||| || | | | || |||||||| |||||| || || Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | || || ||| | || || || || ||| || Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 45923341 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || || ||||||||||| |||| |||| | | || | |||| || | || | Sbjct 45923340 ACCGCGGCAGTTTCCACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 45923286 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| || ||||||||||| ||| |||||||| ||| | || ||| | |||| | Sbjct 45923285 GGGGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTT 45923226 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| || | ||||| | |||| ||| |||||||||||| | | |||||||| | | Sbjct 45923225 TTGTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 45923166 Query 170884 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 | | ||| | | ||||| || ||| | ||||||||| ||||| || | Sbjct 45923165 CTCGGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTT 45923106 Query 170944 TCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | | | | || ||||| |||||||| || || | |||||||||| | || | Sbjct 45923105 TTGTTTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTT 45923046 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | || || ||||| || ||||| | ||| | ||| | ||||| || || || || | Sbjct 45923045 TTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGT 45922986 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 |||| |||||||| |||||||| ||||| || || |||||| || | |||| || | Sbjct 45922985 TGAACCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTA 45922926 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATA 171183 ||||||| ||||| ||| | ||||| | | ||| ||| | | || || Sbjct 45922925 TTCATGGGGCAACTGTGGAAAACACTCTATTTGAGGAC------GGTGATGGTG------ 45922878 Query 171184 AAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTA 171243 |||| || ||||| || ||| | || || || | ||||||||||| | Sbjct 45922877 -----CAAA----TACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 45922827 Query 171244 TGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGAT 171303 || | || | || | || ||||| || || |||||| ||||||| || || ||| | | Sbjct 45922826 TGGTCACCGTTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 45922767 Query 171304 TTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTA 171363 ||||| ||| ||||| | || || || |||| ||| | |||| |||| || Sbjct 45922766 GGTTACATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCG 45922707 Query 171364 TCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAG 171423 | || || || || || ||||| | || || || || || || || || || | |||| Sbjct 45922706 TAGTCGGCCTGGCTCTAAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAG 45922647 Query 171424 CAGAAGACCCAGAGTTCGAG-ACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATG 171482 | |||| || || || ||| ||||||||||| || ||||| ||| | || || ||||| Sbjct 45922646 CGAAAGATCCTGAATTTGAGTACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATT 45922587 Query 171483 AGAGCATGGATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAG 171540 | || |||||| || |||| || || || ||||| || | ||||||| || || | Sbjct 45922586 CGTGCGTGGATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGG 45922529 Query 171541 TGTTACCAAGAGGTAACGCACTTTAA 171566 | ||||| | || ||||| |||||| Sbjct 45922528 TTCTACCACGTGGAAACGCTCTTTAA 45922503 Score = 174 bits (192), Expect = 2e-38 Identities = 369/551 (67%), Gaps = 35/551 (6%) Strand=Plus/Minus Query 171020 TTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACAT 171079 |||||| | ||| | ||| | ||||| || || || || ||||| |||||||| || Sbjct 13891762 TTTTCGATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 13891703 Query 171080 GATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGT 171139 |||||| ||||| ||| || |||| | ||| | |||| || || ||||| || || || Sbjct 13891702 GATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGT 13891643 Query 171140 GCAGAACACATTGTAT--GAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACA 171197 |||| ||| | ||| ||||| | | || || |||| Sbjct 13891642 --AGAAAACACTCTATTCGAAGAT------GGTGATGGTGCAAATA-------------- 13891605 Query 171198 ACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAAC 171257 | ||||| || ||| | || || || | ||||||||||| ||| | || || ||| Sbjct 13891604 -CCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAAC 13891546 Query 171258 AGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTT 171317 | || ||||| || || |||||| ||||||| || || ||| | | ||||| ||| || Sbjct 13891545 CGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 13891486 Query 171318 ATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCA 171377 ||| | || || || |||| ||| | |||| |||| || | || || || || Sbjct 13891485 ATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCT 13891426 Query 171378 CTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAG 171437 || ||||| | || || || || || || || || || | ||||| ||||| || || Sbjct 13891425 CTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAA 13891366 Query 171438 TTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCA 171497 || |||||||||||||| || ||||| ||| | || || ||||| | || |||||| || Sbjct 13891365 TTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCA 13891306 Query 171498 --TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTA 171555 |||| || || || ||||| || | ||||||| || || ||| | || | Sbjct 13891305 GCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAGGA------GCCACGTGGCA 13891254 Query 171556 ACGCACTTTAA 171566 |||| |||||| Sbjct 13891253 ACGCTCTTTAA 13891243 >seq7 Length=31244610 Score = 237 bits (262), Expect = 2e-57 Identities = 347/488 (71%), Gaps = 2/488 (0%) Strand=Plus/Plus Query 169898 TTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAG 169957 ||||| | || ||||| ||||| |||||||| || |||||||| || |||||| ||| | Sbjct 14634319 TTATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTG 14634378 Query 169958 TAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCAT 170017 |||| || | ||||| || || ||||| || ||||||||||| | || || || Sbjct 14634379 TAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTA 14634438 Query 170018 CTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAG 170077 | | ||||| ||||| || || | || || || | ||||| | || || |||| Sbjct 14634439 GTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAG 14634498 Query 170078 AAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGT 170137 | ||||| || || || || || || || || ||||| ||||| || | |||||||| | Sbjct 14634499 AGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAAT 14634558 Query 170138 ATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTAT 170197 ||||| || |||||||| | | ||||||||||| | || | || ||||| | | Sbjct 14634559 ATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAG 14634618 Query 170198 GTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACT 170257 | | ||||| || || | ||||| | || ||||| |||||| | || || ||||| | Sbjct 14634619 GGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATT 14634678 Query 170258 TTAACCAATCAGTTGTTGAT-GCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTA 170316 | |||||||| || |||||| || || || | | || |||| |||| | | Sbjct 14634679 TCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATC 14634737 Query 170317 AACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTA 170376 ||| | || || | ||||||||||| ||||| ||| | ||||| ||||||||||| ||| Sbjct 14634738 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 14634797 Query 170377 GACCTAGC 170384 |||||||| Sbjct 14634798 GACCTAGC 14634805 >seq12 Length=27944835 Score = 120 bits (132), Expect = 4e-22 Identities = 213/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 170074 CAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTC 170133 ||||| ||||| || || || || | | || || ||||| ||||| || | |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 170134 CAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTT 170193 || |||||| || |||||||| | | ||||||||||| | || | || ||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 170194 GTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTC 170253 | | | | ||||| || || | ||||| | || ||| | |||||| | || || ||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 170254 AACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTT 170313 || || |||||||| || |||||| | || | || || |||| |||| | Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 170314 CTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCA 170373 | || | || || | ||||||||||| ||||| ||| ||||| |||| || | Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTTCT 3609959 Query 170374 CTAGACCTAGC 170384 ||||||||||| Sbjct 3609960 CTAGACCTAGC 3609970 >seq2 Length=39559433 Score = 111 bits (122), Expect = 2e-19 Identities = 189/270 (70%), Gaps = 12/270 (4%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 ||||| || | || |||||||||| || || | |||||| || || |||| ||| | Sbjct 19905520 TTTGACATTATGGATGACTGGTTAAGAAGGGACCATTTTGTTTTT-TATGATGATCTAGC 19905578 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 |||| ||| | |||||||| || | | | || |||||||| |||||| || || Sbjct 19905579 GTTTTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 19905638 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | || || ||| | || || || || ||| || Sbjct 19905639 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 19905698 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || |||||||||||||| |||| |||| | | || | |||| || | || | Sbjct 19905699 ACCGCAGCAGTTTCCACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 19905753 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTC 170793 |||| || ||||||||||| |||||||| Sbjct 19905754 GGGGCCCAGAAGCACAAGG-GGATTTGTTC 19905782 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| ||||| |||||||| || ||||||||||||| Sbjct 8166110 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGC 8166051 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || ||| | |||||||| || | | | || |||||||| |||||| || || Sbjct 8166050 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 8165991 Query 170649 GTTACATCATGGTATACACATGG 170671 || || || |||||||| ||||| Sbjct 8165990 GTAACTTCTTGGTATACCCATGG 8165968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212713118080