Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1 508 7e-139 seq7 297 2e-75 seq12 178 1e-39 seq9 111 2e-19 seq2 82.4 9e-11 >seq1 Length=46096743 Score = 508 bits (562), Expect = 7e-139 Identities = 726/1017 (71%), Gaps = 9/1017 (1%) Strand=Plus/Minus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | || |||||| | || | ||||| ||||| || | || |||||||| Sbjct 45923518 TTTGATATTATGGACGACTGGTTAGAA-GAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | ||| |||| ||| ||| | ||| | ||||| ||| | || || ||| | ||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483 || ||||| ||||| ||||| ||| | || |||| || || ||||| || ||| Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCC---TATTTGGAAGGTTGCAATTTC 45923344 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || || ||||| | | | | |||||| || | | |||||| Sbjct 45923343 TTAACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGG 45923284 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 || || ||||||||||| ||||| ||| ||||||||||| |||||||| |||| ||| Sbjct 45923283 GGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 45923224 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || ||||| || |||||| | || ||||||||| | | || |||||| | || Sbjct 45923223 GTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCT 45923164 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| ||| |||||||||| || || ||||| ||| Sbjct 45923163 CGGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTT 45923104 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || | || || || || ||||| ||||| ||| ||||||||| | || ||| Sbjct 45923103 GTTTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTT 45923044 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| |||| || || | ||| | | ||| | |||||||| || || ||||||||| Sbjct 45923043 GGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTG 45922984 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || ||||| || |||||||| || || || | || || | || |||| | ||||| Sbjct 45922983 AACCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATT 45922924 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 ||||| | || || || ||||| | | ||| |||||||| |||||||| ||| Sbjct 45922923 CATGGGGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGC 45922864 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 || ||| | | || || | ||||| |||||||| |||||||| | || ||||| ||| Sbjct 45922863 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGG 45922804 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 || || ||||| ||| |||| ||||| || || |||||| | ||||| || ||| | ||| Sbjct 45922803 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 45922744 Query 170084 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 170143 || || || | ||| | |||| |||||||| | | ||||| ||||| || || Sbjct 45922743 GTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTA 45922684 Query 170144 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG-AC 170202 ||||| || || ||||| ||||| ||| | ||||| ||||||| ||||||||| || Sbjct 45922683 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTAC 45922624 Query 170203 CTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGA 170262 |||||||||||||| || || || || || || ||||||| ||| ||||| || || Sbjct 45922623 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGA 45922564 Query 170263 TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||| || |||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 45922563 TCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 45922507 Score = 329 bits (364), Expect = 4e-85 Identities = 362/482 (75%), Gaps = 0/482 (0%) Strand=Plus/Minus Query 169814 TTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGA 169873 ||| | |||||||| || || ||||||||||| ||||| || |||||||| || || ||| Sbjct 13891746 TTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 13891687 Query 169874 ATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTAT 169933 | || |||| ||| |||| | ||||||||||| | ||| ||||| ||||| | | Sbjct 13891686 GTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTATTC 13891627 Query 169934 GAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACT 169993 ||||| ||||| |||||||| ||| || ||| | | || || | ||||| ||| Sbjct 13891626 GAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACT 13891567 Query 169994 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAAC 170053 ||||| ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| || Sbjct 13891566 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAAT 13891507 Query 170054 AAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCT 170113 || |||||| | ||||| || ||| | ||||| || || | ||| | |||| || Sbjct 13891506 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCT 13891447 Query 170114 ATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATC 170173 |||||| | ||||||| ||||| || || ||||| || || ||||| ||||| ||| Sbjct 13891446 ATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 13891387 Query 170174 AGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAA 170233 | ||||| |||||||| ||||||||||| |||||||||||||| || || || || || Sbjct 13891386 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAG 13891327 Query 170234 GGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAA 170293 || ||||||| ||| ||||| || ||||| || |||||||| | || ||||| || Sbjct 13891326 GGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAG 13891267 Query 170294 GA 170295 || Sbjct 13891266 GA 13891265 Score = 181 bits (200), Expect = 1e-40 Identities = 232/320 (73%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 169733 TTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCA 169792 || || || || ||||| ||||| ||| ||||||||||| || ||||| ||| || Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 169793 GCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTC 169852 || || || | ||| | | ||| | |||||||| || || ||||||||||| ||||| Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 169853 CACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTT 169912 || |||||||| || || ||| | || |||| || |||| | ||||| ||||| | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 169913 ACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGAT 169972 || || || ||||| | | ||| || ||||| |||||||| ||| || ||| | Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 169973 TCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 170032 | || || | ||||| |||||||| |||||||| || || ||||| ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 170033 TTCGGTATTGCGTTTTCTAA 170052 || ||| |||| ||||| || Sbjct 15262456 TTTGGTGTTGCTTTTTCCAA 15262437 >seq7 Length=31244610 Score = 297 bits (328), Expect = 2e-75 Identities = 359/489 (73%), Gaps = 0/489 (0%) Strand=Plus/Plus Query 168361 ATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTT 168420 ||| | || ||||| || || || || || || |||||||| || || ||| | || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 168421 GCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCT 168480 ||||| ||||| || || | || ||||||||||| || ||||| || ||| | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 168481 CTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAA 168540 | | || || || ||||||| ||||||| || | ||||||| || || ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 168541 GAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATAC 168600 ||||| || || || || || |||||||||||||| || || || || ||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 168601 GCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGC 168660 ||| || |||||||| || || || ||||||||| | ||||| |||||||| | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 168661 ATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTC 168720 || |||||||| || | || | || ||||| |||||||| ||||| ||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 168721 AACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAAC 168780 ||||| || | ||||| | || ||||| || | || || ||||| ||| | | ||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 168781 CGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAT 168840 || ||| ||| ||||||||||| ||||| || ||||| || ||||||||||| || || Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 168841 CTTGCTGCT 168849 || |||||| Sbjct 14634801 CTAGCTGCT 14634809 >seq12 Length=27944835 Score = 178 bits (196), Expect = 1e-39 Identities = 227/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 168535 CAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTC 168594 ||||| ||||| || || || || | ||||||||||||| || || || || |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 168595 CAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTT 168654 ||||| ||| || |||||||| || || || ||||||||| | ||||| |||||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 168655 GTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTC 168714 | || || |||||||| || | || | || ||| | |||||||| ||||| ||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 168715 AACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTT 168774 || || ||||| || | ||||| || ||||| || | || |||||||| ||| | Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 168775 CTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCA 168834 | || || ||| ||| ||||||||||| ||||| || | ||| || |||| || | Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTTCT 3609959 Query 168835 CTCGATCTTGCTG 168847 || || || |||| Sbjct 3609960 CTAGACCTAGCTG 3609972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 170143 TCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 170202 || ||| || || ||||| ||||| ||| | ||| | |||||||| ||||||||||| Sbjct 26735462 TCCTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGAC 26735521 Query 170203 CTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGA 170262 |||||||||||||| || || || || || || |||||| ||| ||||| || || Sbjct 26735522 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGTGTGGATGGCAGCTCAGGA 26735581 Query 170263 TCAACC 170268 ||| || Sbjct 26735582 TCAGCC 26735587 >seq9 Length=26294017 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 169751 GGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTG 169810 ||||| ||| ||||||||||| || ||||| ||| |||| || || | ||| | Sbjct 19895509 GGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATC 19895450 Query 169811 TTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCA 169870 | ||| | |||||||| || || ||||||||||| ||||| || |||||||| || || Sbjct 19895449 CTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 19895390 Query 169871 GGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTG 169930 ||| | || |||| || |||| | ||||| ||||| | || || || ||||| | Sbjct 19895389 GGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTA 19895330 Query 169931 TATGAAGACGGTGA 169944 | ||| |||||||| Sbjct 19895329 TTTGAGGACGGTGA 19895316 >seq2 Length=39559433 Score = 82.4 bits (90), Expect = 9e-11 Identities = 176/259 (68%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||| | | | | |||| ||||| || || | | ||| | | | ||| || Sbjct 19905532 GATGACTGGTTAAGAAGGGACCATTTTGTTTTTTATGAT-GATCTAGCGTTTTGCTTTTT 19905590 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 || ||| ||| | ||| | ||||| ||| | || || ||| | ||||| ||||| ||| Sbjct 19905591 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 19905650 Query 169439 TACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCT 169495 || ||||| ||| | || |||| || || ||||| || ||| | || || || Sbjct 19905651 TATACCCATGGATTGGCGAGTTCC---TATTTGGAAGGTTGCAATTTCTTAACCGCAGCA 19905707 Query 169496 GTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCA 169555 || || ||||| | | | | |||||| || | | |||||||| ||||||||| Sbjct 19905708 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCAGAAGCA 19905767 Query 169556 CAAGGCGATTTCGTTCGCT 169574 ||||| ||||| |||| || Sbjct 19905768 CAAGGGGATTT-GTTCCCT 19905785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574473513828960