Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq1 574 5e-159 seq7 363 2e-95 seq12 203 4e-47 seq2 127 2e-24 seq9 107 2e-18 >seq1 Length=46096743 Score = 574 bits (636), Expect = 5e-159 Identities = 740/1007 (73%), Gaps = 13/1007 (1%) Strand=Plus/Minus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 || |||||| ||| | |||| ||||| |||||| | || |||||||| || | |||||| Sbjct 45923506 GACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTTTT 45923449 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||||||| | ||| | || |||||| |||| ||||| ||||| | || |||| Sbjct 45923448 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 45923389 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || || ||||| ||||||||| |||| ||| |||| ||||||| | ||||||| Sbjct 45923388 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCGGCAG 45923331 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 |||| || || || | | | | || ||| | |||| || ||||| || || || | Sbjct 45923330 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 45923271 Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503 |||||||||| | ||| ||| | || || || ||| ||||||| || ||||| | Sbjct 45923270 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 45923211 Query 165504 GGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGT 165562 ||||||| || ||||| ||||||||| | ||||| |||||| | || || ||| || | Sbjct 45923210 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 45923151 Query 165563 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 165622 | || || || ||||| ||| | |||||||| || ||||||||||||||| | | || Sbjct 45923150 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATTC 45923092 Query 165623 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 165682 || || || || ||||| ||||| ||||||| || | || ||| || || ||||| Sbjct 45923091 CTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGCG 45923032 Query 165683 ATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCAT 165742 || || | ||| | |||||| | |||||||| ||||| ||||| ||||| || |||||| Sbjct 45923031 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 45922972 Query 165743 ATGATGGGTGTTGC-AG-GTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTA 165800 |||||||| ||||| || |||| | |||| || |||| | || || ||||| | | Sbjct 45922971 ATGATGGGAGTTGCCAGAGTAT--TAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCAA 45922914 Query 165801 CAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACT 165860 | || || || ||||| | | | || ||||| | ||||||||| ||| || ||| || Sbjct 45922913 CTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACC 45922854 Query 165861 CTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCT 165920 | ||||||| |||||||| || |||||||| || | || || || ||||| || |||| Sbjct 45922853 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCT 45922794 Query 165921 TCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTA 165980 | ||| |||| ||| ||||| | ||||| |||||||||||||| ||||| || || | Sbjct 45922793 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCA 45922734 Query 165981 TGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 166040 ||| | |||| ||| | || || | | || || ||||| ||||| ||||| |||| Sbjct 45922733 CCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATG 45922674 Query 166041 ACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGA-AACCTTCTACACG 166099 |||| || ||||| || ||| | ||||| |||| || || ||||| || |||||||| Sbjct 45922673 ACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACC 45922614 Query 166100 AAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCAT 166159 ||||| ||||| || || || ||| ||||||| ||| ||||| | ||||| || ||| Sbjct 45922613 AAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCAT 45922554 Query 166160 GAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 || || || | |||||||| || ||||| || | || ||||| || Sbjct 45922553 GAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 45922507 Score = 342 bits (378), Expect = 6e-89 Identities = 370/490 (76%), Gaps = 3/490 (1%) Strand=Plus/Minus Query 165693 TCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTG 165752 ||||| |||||| ||||||| ||||| ||||| ||||| || |||||||||||||| | Sbjct 13891751 TCCTTTTCTTCC---AAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAG 13891695 Query 165753 TTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATA 165812 |||| || | | || | || |||| | || |||||||| | ||| ||||| || | Sbjct 13891694 TTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACA 13891635 Query 165813 CTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGG 165872 |||| | |||||||||| | ||||||||| ||| || ||| || | ||||||| | Sbjct 13891634 CTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTG 13891575 Query 165873 AAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGT 165932 ||||||| || |||||||| ||||| ||||| || ||||| || ||||| ||| |||| | Sbjct 13891574 AAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTT 13891515 Query 165933 TTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGA 165992 || ||||| | ||||| |||||||||||||| ||||| || || | ||| | |||| Sbjct 13891514 TTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGA 13891455 Query 165993 CAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCC 166052 ||| | || || | |||| || ||||| ||||| ||||| |||||||| || |||| Sbjct 13891454 TGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCC 13891395 Query 166053 AAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCT 166112 | || ||| | ||||| ||||| || || ||||| || |||||||| ||||| ||||| | Sbjct 13891394 AGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTT 13891335 Query 166113 TGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCT 166172 | || || ||| ||||||| ||| ||||| | ||||| || ||||| || || | | Sbjct 13891334 TAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATAT 13891275 Query 166173 TCCCTGAAGA 166182 ||||||| || Sbjct 13891274 TCCCTGAGGA 13891265 Score = 190 bits (210), Expect = 2e-43 Identities = 231/315 (73%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 165620 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCA 165679 || || || || || ||||| ||||| ||||||| || || || ||| || || ||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 165680 GCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTT 165739 || || || | ||| | |||||| | |||||||| ||||| ||||| ||||| || ||| Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 165740 CATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTT 165799 ||||||||||| ||||| || | | || | || |||| | || || ||||| | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 165800 ACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGAC 165859 || || || || ||||| | | | |||||||| | ||||||||| ||| || ||| || Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 165860 TCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATC 165919 | ||||||| |||||||| || |||||||| || || || || || ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 165920 TTCGGTATTGCGTTT 165934 || ||| |||| ||| Sbjct 15262456 TTTGGTGTTGCTTTT 15262442 >seq7 Length=31244610 Score = 363 bits (402), Expect = 2e-95 Identities = 374/489 (76%), Gaps = 0/489 (0%) Strand=Plus/Plus Query 164283 ATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTT 164342 ||| | || ||||| ||||| || |||||||| ||||| || || || ||| | || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 164343 GCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCG 164402 ||||| ||||| |||||||| || |||||||| ||||| ||||| |||| || ||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 164403 CTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAA 164462 || | | |||||||| |||| || ||| || | ||||||| ||||||||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 164463 GAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATAC 164522 ||||| || || || ||||| |||||||| ||||| ||||| || | ||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 164523 GCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGC 164582 ||| || |||||||| ||||| || ||||||||| | ||||| |||||||| | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 164583 ATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTC 164642 || |||||||| || | ||| || || ||||| |||||||| ||||| ||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 164643 AACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAAC 164702 ||||| || | | ||| | || ||||| || | || |||||||| || | ||||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 164703 CGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGAT 164762 || ||| ||| ||||||||||| |||||||| ||||| ||||||||||||||||| || Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 164763 CTCGCTGCT 164771 || |||||| Sbjct 14634801 CTAGCTGCT 14634809 >seq12 Length=27944835 Score = 203 bits (224), Expect = 4e-47 Identities = 240/325 (74%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 164445 TACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGT 164504 |||| ||| ||||||| ||||| || || || ||| | ||||||| ||||| ||||| Sbjct 3609648 TACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGC 3609707 Query 164505 CGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCT 164564 || | ||||||||||| ||| || |||||||| ||||| || ||||||||| | ||| Sbjct 3609708 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3609767 Query 164565 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAAC 164624 || |||||||| | || || |||||||| || | ||| || || ||| | |||||| Sbjct 3609768 GCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAAC 3609827 Query 164625 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACT 164684 || ||||| ||||| || ||||| || | | ||| || ||||| || | || || Sbjct 3609828 CTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACC 3609887 Query 164685 TGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCT 164744 ||||| || | |||| || ||| ||| ||||||||||| |||||||| | ||| ||| Sbjct 3609888 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCT 3609947 Query 164745 CACAACTTCCCTCTGGATCTCGCTG 164769 |||| || |||| || || |||| Sbjct 3609948 CACAGTTTTTCTCTAGACCTAGCTG 3609972 >seq2 Length=39559433 Score = 127 bits (140), Expect = 2e-24 Identities = 181/250 (72%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | | | || | ||| |||||| || | | ||| | || | |||||| Sbjct 19905532 GATGACTGGTTAAGAAGGGACCATTTTGTTTTTTATGAT-GATCTAGCGTTTTGCTTTTT 19905590 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||||||| | ||| | || |||||| |||| ||||| ||||| | || |||| Sbjct 19905591 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 19905650 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || || ||||| ||||||||| |||| ||| |||| ||||||| | || |||| Sbjct 19905651 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 19905708 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 |||| || || || | | | | || ||| | |||| || ||||| || || || | Sbjct 19905709 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCAGAAGCAC 19905768 Query 165444 AAGGGGATTT 165453 |||||||||| Sbjct 19905769 AAGGGGATTT 19905778 >seq9 Length=26294017 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 165636 TGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCC 165695 |||| ||||| ||||||| || || || ||| || || ||||| || || | ||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 165696 TTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTG 165755 | |||||| | |||||||| ||||| ||||| ||||| || |||||||||||||| |||| Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 165756 CAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTC 165815 | || | | || | || |||| | || || ||||| | || || || || |||| Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 165816 TGTATCAAGATGGTGACGATGCAA 165839 | | | | || ||||| | || || Sbjct 19895331 TATTTGAGGACGGTGATGGTGTAA 19895308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556924716461280