Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq7 307 1e-78 seq12 161 1e-34 >seq7 Length=31244610 Score = 307 bits (340), Expect = 1e-78 Identities = 359/485 (74%), Gaps = 0/485 (0%) Strand=Plus/Plus Query 168989 ATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTA 169048 ||| | |||||||| ||||| || ||||| ||||||||||| || || ||| ||| ||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 169049 GCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCT 169108 || ||| | ||||| || || |||||| || ||||||||||| | ||||| ||| | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 169109 CTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAA 169168 | ||||| || || ||||| | ||||| || | ||||||| || |||||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 169169 GAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTAT 169228 ||||| || ||||||||||| || || ||||| || || || ||||||||||||| ||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 169229 GCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGT 169288 || ||||| |||||||| | | | ||||||||| | || | | || || | | | Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 169289 GTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTT 169348 | ||||| || || | ||||| |||| ||||| |||||| | |||||||| || || Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 169349 AACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAAC 169408 |||||||| || || ||| | ||| | ||| ||| |||| ||| | | ||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 169409 AGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGAC 169468 | || || |||||||||||||||||||| || ||||| |||||||||||||| |||||| Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 169469 TTAGC 169473 |||| Sbjct 14634801 CTAGC 14634805 >seq12 Length=27944835 Score = 161 bits (178), Expect = 1e-34 Identities = 226/316 (72%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 169161 GTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCT 169220 ||||||| ||||| || ||||||||| | | || ||||| || || || ||||||||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 169221 TCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAG 169280 |||| ||||| ||||| |||||||| | | | ||||||||| | || | | || | Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 169281 TTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGAT 169340 | | | | | ||||| || || | ||||| |||| ||| | |||||| | ||||||| Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 169341 TTAACTTTAACCAATCAGTTGTAGATGTTAAC---GGTAAGATCATTCCTACATGGGGTG 169397 | || || |||||||| ||||| || |||| ||| | || ||| |||| || Sbjct 3609838 TCAATTTAAACCAATC---TGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTG 3609894 Query 169398 ACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACT 169457 | | | || | || || |||||||||||||||||||| || | ||| ||||||| | Sbjct 3609895 ATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTT 3609954 Query 169458 TCCCACTAGACTTAGC 169473 | | |||||| |||| Sbjct 3609955 TTTCTCTAGACCTAGC 3609970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564441515333760