Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 340 2e-88 seq7 268 1e-66 seq12 141 1e-28 seq2 104 3e-17 >seq1 Length=46096743 Score = 340 bits (376), Expect = 2e-88 Identities = 703/1044 (67%), Gaps = 34/1044 (3%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | |||||||||||| | ||||| ||||| || || | ||||||||||| Sbjct 45923518 TTTGATATTATGGACGACTGGTTAGA-AGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || ||| | ||||||||||| | || | || |||||||| ||| || || || Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || || |||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 45923341 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || || ||||| ||||| |||| |||| | | || | |||| || | || | Sbjct 45923340 ACCGCGGCAGTTTCCACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 45923286 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| || ||||||||||| || ||||||| ||| | || || || |||| | Sbjct 45923285 GGGGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTT 45923226 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 |||| || | ||||| | |||| ||| |||||||||||| | ||||| ||||| | | Sbjct 45923225 TTGTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 45923166 Query 173306 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 173365 | | ||| | | ||||| || ||| | ||||||||| ||||| || | Sbjct 45923165 CTCGGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTT 45923106 Query 173366 TCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425 | | | | || | || || ||||| || || | |||||||||| | || | Sbjct 45923105 TTGTTTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTT 45923046 Query 173426 TCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 173485 | || || ||||| || ||||| | ||| | ||| | ||||| || || || || | Sbjct 45923045 TTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGT 45922986 Query 173486 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCA 173545 |||| |||||||| |||||||| ||||| || || |||||| || | ||||| || | Sbjct 45922985 TGAACCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTA 45922926 Query 173546 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTA 173605 ||||||| ||||| ||| | ||||| | | ||| ||| ||| ||| Sbjct 45922925 TTCATGGGGCAACTGTGGAAAACACTCTATTTGAGGAC------------GGTGATGGT- 45922879 Query 173606 AGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTA 173665 | | || ||| | || ||| | || || || | |||||||||||| | Sbjct 45922878 --------GCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 45922827 Query 173666 TGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGAT 173725 || | || | || | || ||||| || || |||||| | || ||||| || ||| | | Sbjct 45922826 TGGTCACCGTTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 45922767 Query 173726 TTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTA 173785 ||||| ||| | ||| | || ||||| |||| ||| | |||| | || || Sbjct 45922766 GGTTACATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCG 45922707 Query 173786 TCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 | || || || || || ||||| | || || ||||| || || || || || | |||| Sbjct 45922706 TAGTCGGCCTGGCTCTAAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAG 45922647 Query 173846 CAGAAGATCCAGAGTTCGAG-ACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATG 173904 | ||||||| || || ||| ||||||||||| || ||||| ||| | || || ||||| Sbjct 45922646 CGAAAGATCCTGAATTTGAGTACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATT 45922587 Query 173905 AGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTG 173964 | || |||||| || || ||||| || ||||| || | |||| || || || || Sbjct 45922586 CGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTT 45922527 Query 173965 TTACCAAGAGGTAACGCACTTTAA 173988 ||||| | || ||||| |||||| Sbjct 45922526 CTACCACGTGGAAACGCTCTTTAA 45922503 Score = 179 bits (198), Expect = 4e-40 Identities = 367/546 (67%), Gaps = 27/546 (5%) Strand=Plus/Minus Query 173443 TTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATG 173502 ||||| | ||| | ||| | ||||| || || || || ||||| |||||||| ||| Sbjct 13891761 TTTCGATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATG 13891702 Query 173503 ATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTG 173562 ||||| ||||| ||| || |||| | ||| | ||||| || || ||||| || || || Sbjct 13891701 ATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGT- 13891643 Query 173563 CAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATTCAATCCACAACT 173622 |||| ||| | ||| || || || ||| ||| | | || Sbjct 13891642 -AGAAAACACTCTAT---------TCG-AAGATGGTGATGGTGCAAAT---------ACC 13891603 Query 173623 TTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGA 173682 ||| | || ||| | || || || | |||||||||||| ||| | || || ||| | Sbjct 13891602 TTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGC 13891543 Query 173683 TTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATG 173742 || ||||| || || |||||| | || ||||| || ||| | | ||||| ||| | ||| Sbjct 13891542 TTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 13891483 Query 173743 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTT 173802 | || ||||| |||| ||| | |||| | || || | || || || || || Sbjct 13891482 CTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTG 13891423 Query 173803 AACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTC 173862 ||||| | || || ||||| || || || || || | ||||| |||||||| || || Sbjct 13891422 AACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTT 13891363 Query 173863 GAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 173922 |||||||||||||| || ||||| ||| | || || ||||| | || |||||| || || Sbjct 13891362 GAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCT 13891303 Query 173923 GTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCA 173982 ||||| || ||||| || | |||| || || || ||| | || ||||| Sbjct 13891302 CAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGA------GCCACGTGGCAACGCT 13891249 Query 173983 CTTTAA 173988 |||||| Sbjct 13891248 CTTTAA 13891243 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || || Sbjct 31979413 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 31979472 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| | ||||| |||||||| Sbjct 31979473 TGGTCCTGGAATGGGTCCAATTGGTGT 31979499 >seq7 Length=31244610 Score = 268 bits (296), Expect = 1e-66 Identities = 356/492 (72%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 172316 TTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAG 172375 ||||| | || ||||| ||||| |||||||| || |||||||| || |||||| ||| | Sbjct 14634319 TTATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTG 14634378 Query 172376 TAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTT 172435 |||| || | || || || || ||||| || ||||| ||||| || || || ||| Sbjct 14634379 TAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTA 14634438 Query 172436 CTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAG 172495 | | ||||| || || |||||| ||||| || | || |||| || || |||| Sbjct 14634439 GTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAG 14634498 Query 172496 AAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGT 172555 | ||||| || || || || || || || || ||||| ||||| || | |||||||| | Sbjct 14634499 AGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAAT 14634558 Query 172556 ATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTAT 172615 ||||| ||| |||||||| | | | ||||||||| | || | || ||||| | | Sbjct 14634559 ATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAG 14634618 Query 172616 GTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACT 172675 | | ||||| || || | ||||| |||| ||||| |||||||| ||||| ||||| | Sbjct 14634619 GGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATT 14634678 Query 172676 TCAACCAATCAGTTGTAGAT-GCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTT 172734 |||||||||| || || ||| || || ||| || || ||| |||| ||| | | Sbjct 14634679 TCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATC 14634737 Query 172735 AACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTA 172794 ||| | || || || ||||||||||| ||||| ||| | ||||| ||||||||||| || Sbjct 14634738 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 14634797 Query 172795 GACCTTGCTTCT 172806 ||||| ||| || Sbjct 14634798 GACCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 141 bits (156), Expect = 1e-28 Identities = 221/315 (70%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 172492 CAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTC 172551 ||||| ||||| || || || || | | || || ||||| ||||| || | |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 172552 CAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTT 172611 || |||||| ||| |||||||| | | | ||||||||| | || | || ||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 172612 GTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTC 172671 | | | | ||||| || || | ||||| |||| ||| | |||||||| ||||| ||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 172672 AACTTCAACCAATCAGTTGTAGATGCTAAC---GGTAAGATTGTTCCTACATGGGGTGAC 172728 || || |||||||| ||||| || |||| ||| ||||| ||| |||| ||| Sbjct 3609840 AATTTAAACCAATC---TGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGAT 3609896 Query 172729 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTC 172788 | | || | || || || ||||||||||| ||||| ||| ||||| |||| || Sbjct 3609897 ATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTT 3609956 Query 172789 CCATTAGACCTTGCT 172803 | ||||||| ||| Sbjct 3609957 TCTCTAGACCTAGCT 3609971 >seq2 Length=39559433 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | |||||||||||| ||||| ||||| || || | ||||||||||| Sbjct 8166110 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGC 8166051 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || ||| | ||||||||||| | || | || |||||||| ||| || || || Sbjct 8166050 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 8165991 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGG 173117 || || || |||||||| ||||| | || ||| ||| | ||||| Sbjct 8165990 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGG 8165944 Score = 98.7 bits (108), Expect = 1e-15 Identities = 179/259 (69%), Gaps = 11/259 (4%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 ||||| || | || |||||||||| || || | ||| || || | |||| ||| | Sbjct 19905520 TTTGACATTATGGATGACTGGTTAAGAAGGGACCATTTTGTTTTT-TATGATGATCTAGC 19905578 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 |||| ||| | ||||||||||| | || | || |||||||| ||| || || || Sbjct 19905579 GTTTTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 19905638 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || || |||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 19905639 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 19905698 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || |||||||| ||||| |||| |||| | | || | |||| || | || | Sbjct 19905699 ACCGCAGCAGTTTCCACCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 19905753 Query 173186 GGGGACCTGAAGCACAAGG 173204 |||| || ||||||||||| Sbjct 19905754 GGGGCCCAGAAGCACAAGG 19905772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051111792320