Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1 473 1e-128 seq7 342 6e-89 seq12 181 1e-40 seq9 141 1e-28 >seq1 Length=46096743 Score = 473 bits (524), Expect = 1e-128 Identities = 721/1020 (71%), Gaps = 5/1020 (0%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | |||| |||||| ||| | || ||||| || ||| | || |||||||| Sbjct 45923518 TTTGATATTATGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | ||| |||| ||||||| | || | || || ||| |||| || |||||||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| ||||||||| |||| | ||||||| | || ||| ||||| | Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 45923341 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGT 163860 || ||||| || || || ||||| | | | | || ||| | | || || ||||| Sbjct 45923340 ACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 45923281 Query 163861 CCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTG 163920 || || || || || ||||| || ||| ||| | || || || |||| |||||| Sbjct 45923280 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 45923221 Query 163921 GCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC 163980 || ||||| || || ||||| || || ||||||||| | || ||||||||||||||||| Sbjct 45923220 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 45923161 Query 163981 -CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGT 164039 ||| || | | | || || ||||| ||| | |||||||| || || ||||| || || Sbjct 45923160 TCTG-TTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGT 45923102 Query 164040 TAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGG 164099 | | || || || || || ||||| ||||| |||||||||| | || |||||| Sbjct 45923101 TTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGG 45923042 Query 164100 AGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAA 164159 || ||||| || || ||||| || | ||| | |||||||||||||| ||||| ||||| Sbjct 45923041 CGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAA 45922982 Query 164160 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCA 164219 ||| || ||||||||||||||||| | || |||| | || |||||| |||||||| Sbjct 45922981 CCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCA 45922922 Query 164220 CGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGC 164279 || | || || ||||| || | | ||| || || || ||||| ||||| || Sbjct 45922921 TGGGGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGC 45922862 Query 164280 GTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 164339 ||| | | || || | ||||| |||||||| |||||||| | || ||||| ||||| Sbjct 45922861 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTC 45922802 Query 164340 GCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 164399 || ||||| |||||||| ||||| || || || ||| | ||||| || ||| | ||||| Sbjct 45922801 CCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGT 45922742 Query 164400 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCG 164459 || || | ||| |||||| |||||||| | | ||||| ||||| || || || Sbjct 45922741 ACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACG 45922682 Query 164460 TGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAG-ACTT 164518 ||| || || || || || || || | ||||| |||||||||| || ||| |||| Sbjct 45922681 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTT 45922622 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 |||| ||||| || || | || ||||| || | ||||| ||| | ||| | || | Sbjct 45922621 TCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATC 45922562 Query 164579 AGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 |||| ||| || | ||||| || || || || || | || || || ||||||| Sbjct 45922561 AGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 45922502 Score = 284 bits (314), Expect = 1e-71 Identities = 334/452 (74%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 164117 GATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGG 164176 ||| | || | ||| | |||||||||||||| ||||| |||||||| || |||||||||| Sbjct 13891757 GATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGG 13891698 Query 164177 GAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAA 164236 ||||||| || || |||||| ||| |||||| ||||| || || | || || |||| Sbjct 13891697 GAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAA 13891638 Query 164237 ATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGG 164296 | || | | |||||||| || ||||| ||||| || ||| | | || || | Sbjct 13891637 ACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAG 13891578 Query 164297 AAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTG 164356 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| ||||||| Sbjct 13891577 CTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTG 13891518 Query 164357 CGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTAT 164416 | ||||| || || || ||| | ||||| || ||| | ||||| || || | ||| ||| Sbjct 13891517 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTAT 13891458 Query 164417 GGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAA 164476 ||| |||||||| | ||||||| ||||| || || ||||| || || || || Sbjct 13891457 GGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTT 13891398 Query 164477 GTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACATCT 164536 || || || | ||||| ||||||||||| || ||||||||||| ||||| || || Sbjct 13891397 CCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTC 13891338 Query 164537 TATTGAACGAAGGACTCCGTGCATGGTTAGCA 164568 | || ||||| || | ||||| ||| | ||| Sbjct 13891337 TTTTAAACGAGGGTATTCGTGCGTGGATGGCA 13891306 Score = 221 bits (244), Expect = 1e-52 Identities = 241/320 (75%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 164047 TTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCA 164106 || || || || || ||||| ||||| |||||||||| || || |||||| || ||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 164107 GCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTC 164166 || || || ||||| || | ||| | |||||||||||||| ||||| |||||||| || Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 164167 CATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTC 164226 ||||||||||||||||| || || |||||| || |||||| |||||||| || | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 164227 ACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGAT 164286 || |||||||| || | | ||| ||||| || ||||| ||||| || ||| | Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 164287 TCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 164346 | || || | ||||| |||||||| |||||||| || || ||||| ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 164347 TTCGGTGTTGCGTTTTCTAA 164366 || |||||||| ||||| || Sbjct 15262456 TTTGGTGTTGCTTTTTCCAA 15262437 >seq7 Length=31244610 Score = 342 bits (378), Expect = 6e-89 Identities = 369/489 (75%), Gaps = 0/489 (0%) Strand=Plus/Plus Query 162883 ATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTC 162942 ||| |||| ||||| ||||| || ||||| || |||||||| || |||||||| ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 162943 GCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCA 163002 || ||||| ||||| ||||| || |||||||| ||||| ||||| ||||| || ||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 163003 CTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAA 163062 | || | || || ||||||| || || || | ||||||| || |||||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 163063 GAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATAT 163122 |||||||| || || || || || || |||||||| || || || || |||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 163123 GCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGC 163182 || || |||||||| ||||| || ||||||||| | ||||| |||||||| | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 163183 ATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTC 163242 || |||||||| || | || | || ||||| |||||||| ||||| ||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 163243 AACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAAC 163302 ||||| || | ||||| | || ||||| || | || || ||||| || | | ||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 163303 CGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGAC 163362 ||||| | | ||||||||||| |||||||| || ||||||||||||||||| || ||| Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 163363 CTGGCAGCT 163371 || || ||| Sbjct 14634801 CTAGCTGCT 14634809 >seq12 Length=27944835 Score = 181 bits (200), Expect = 1e-40 Identities = 228/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 163055 GTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCT 163114 ||||||| |||||||| || || || | | || |||||||| || || || || |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 163115 TCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 163174 |||||||||| || |||||||| ||||| || ||||||||| | ||||| ||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 163175 TTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTT 163234 | | || || |||||||| || | || | || ||| | |||||||| ||||| | Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 163235 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACG 163294 |||| || ||||| || | ||||| || ||||| || | || |||||||| || Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 163295 TTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCC 163354 | | || ||||| | | ||||||||||| |||||||| | |||||||||| || Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTT 3609957 Query 163355 CACTTGACCTGGC 163367 | || ||||| || Sbjct 3609958 CTCTAGACCTAGC 3609970 >seq9 Length=26294017 Score = 141 bits (156), Expect = 1e-28 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 164063 TGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCC 164122 |||| ||||| |||||||||| || || |||||| || ||||| || || ||||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 164123 TCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTG 164182 || | ||| | |||||||||||||| ||||| |||||||| || |||||||||||||||| Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 164183 CTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACAT 164242 | || || |||||| || |||||| |||||||| || | || || ||||| || Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 164243 TGTATGAAGATGGAGA 164258 | | ||| || || || Sbjct 19895331 TATTTGAGGACGGTGA 19895316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557583916362400