Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1 581 4e-161 seq7 307 1e-78 seq12 138 1e-27 seq2 127 2e-24 seq9 114 1e-20 >seq1 Length=46096743 Score = 581 bits (644), Expect = 4e-161 Identities = 738/1005 (73%), Gaps = 9/1005 (1%) Strand=Plus/Minus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 || |||||| ||| | | || ||||| |||||| | || |||||||| || | |||||| Sbjct 45923506 GACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTTTT 45923449 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||||||| | ||| | || |||||| |||| ||||| |||| || || |||| Sbjct 45923448 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 45923389 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAG 168672 ||||| || || ||||| ||||||||| |||| || |||| ||||||| | ||||||| Sbjct 45923388 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCGGCAG 45923331 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 || || || || || | | | || ||| | |||| || ||||| || || |||| Sbjct 45923330 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 45923271 Query 168733 AAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACG 168792 |||||||||| | ||||||||| | || || || ||| ||||||| || ||||| | Sbjct 45923270 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 45923211 Query 168793 GGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 168851 ||||||| || ||||| ||||||||| | ||||| |||||||| || || ||| || | Sbjct 45923210 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 45923151 Query 168852 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 168911 | || || || ||||| ||| | |||||||| || ||||||||||||||| | | || Sbjct 45923150 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATTC 45923092 Query 168912 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 168971 || || || || ||||| ||||| ||||||| || | || ||| || || |||| Sbjct 45923091 CTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGCG 45923032 Query 168972 ATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCAT 169031 || || |||||| | |||||| | |||||||| ||||| ||||| |||| ||||||||| Sbjct 45923031 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 45922972 Query 169032 ATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACA 169091 |||||||| || || | | || || | || |||| | || |||||||| | || Sbjct 45922971 ATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCAACT 45922912 Query 169092 GTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGC 169151 || || || ||||| | | | || ||||| |||||||| ||| || ||| || Sbjct 45922911 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 45922852 Query 169152 ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTT 169211 ||||| | || || || ||||||||||| || | || || || ||||| || |||||| Sbjct 45922851 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCTTT 45922792 Query 169212 GGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 169271 ||| |||| || ||||| | ||||| |||||||||||||| ||||| || || | Sbjct 45922791 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 45922732 Query 169272 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 169331 ||| | |||| ||| | || || | | || || ||||| ||||| ||||| |||||| Sbjct 45922731 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATGAC 45922672 Query 169332 TTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAG-ACGTTCTACACCAA 169390 || |||||||| || ||| | ||||| ||||||| || |||||| || ||||||||||| Sbjct 45922671 TTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACCAA 45922612 Query 169391 GAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGA 169450 || || || || ||||| ||| ||||||| ||| | ||| || ||||| |||||||| Sbjct 45922611 AAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 45922552 Query 169451 GAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 || || | ||||||||||| || || || || || || || || Sbjct 45922551 AAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 45922507 Score = 342 bits (378), Expect = 6e-89 Identities = 374/497 (75%), Gaps = 0/497 (0%) Strand=Plus/Minus Query 168975 TTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATG 169034 || |||| | | || ||| | |||||||| ||||| ||||| |||| |||||||||||| Sbjct 13891761 TTTCGATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATG 13891702 Query 169035 ATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTA 169094 ||||| || || || | || || | ||| |||| | || || ||||| | ||| ||| Sbjct 13891701 ATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTA 13891642 Query 169095 GAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACT 169154 || || ||||| | |||||||||| |||||||| ||| || ||| || ||| Sbjct 13891641 GAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACT 13891582 Query 169155 CAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGT 169214 || | || || || ||||||||||| ||||| ||||| || ||||| || ||||||||| Sbjct 13891581 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGT 13891522 Query 169215 ATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGT 169274 |||| || ||||| | ||||| |||||||||||||| ||||| || || | ||| Sbjct 13891521 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGT 13891462 Query 169275 CTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTT 169334 | |||| ||| | || || | |||| || ||||| ||||| ||||| |||||||| Sbjct 13891461 TTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTC 13891402 Query 169335 GTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAAC 169394 |||||||| || ||| | ||||| |||||||| || |||||||| ||||||||||| || Sbjct 13891401 GTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAAT 13891342 Query 169395 ATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAAC 169454 || || || ||||| ||| ||||||| ||| | ||| || ||||| |||||||| || Sbjct 13891341 ATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAAT 13891282 Query 169455 TTTGTGTTCCCTGAGGA 169471 || | ||||||||||| Sbjct 13891281 CTTATATTCCCTGAGGA 13891265 Score = 179 bits (198), Expect = 4e-40 Identities = 228/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 168909 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCA 168968 || || || || || ||||| ||||| ||||||| || || || ||| || || || Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 168969 GCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTT 169028 || || || |||||| | |||||| | |||||||| ||||| ||||| |||| |||||| Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 169029 CATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTT 169088 ||||||||||| || || || | || || | || |||| | || |||||||| | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 169089 ACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGAC 169148 || || || || ||||| | | | |||||||| |||||||| ||| || ||| || Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 169149 AGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATC 169208 ||||| | || || || ||||||||||| || || || || || ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 169209 TTTGGTATTGCGTT 169222 |||||| |||| || Sbjct 15262456 TTTGGTGTTGCTTT 15262443 >seq7 Length=31244610 Score = 307 bits (340), Expect = 1e-78 Identities = 356/489 (73%), Gaps = 0/489 (0%) Strand=Plus/Plus Query 167586 ATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTT 167645 ||| |||| ||||| ||||| || |||||||| ||||| || || || ||| | || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 167646 GCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCG 167705 ||||| |||||||||||||| || |||||||| ||||| ||||| |||| |||||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 167706 CTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAA 167765 || | | |||||||| |||| || ||| || | ||||||| || ||||| || Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 167766 GAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATAC 167825 |||||||| ||||| || || || ||||||||||| || || || | ||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 167826 GCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGT 167885 || || |||||||| || || | |||||||||||||| || |||||||| | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 167886 ATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTC 167945 || |||| |||||||| ||||| ||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 167946 AACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAAC 168005 ||||| ||| | ||||||| ||| ||| | ||||||||| || | ||||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 168006 CGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGAC 168065 |||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 168066 CTTGCTGCT 168074 || |||||| Sbjct 14634801 CTAGCTGCT 14634809 >seq12 Length=27944835 Score = 138 bits (152), Expect = 1e-27 Identities = 214/315 (68%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 167758 GTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCT 167817 |||| || |||||||| ||||| || | | ||||||||||| || || || | |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 167818 TCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTG 167877 ||||||| || || |||||||| || || | |||||||||||||| || ||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 167878 TTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTT 167937 | | || || |||| |||||||| ||||| | Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 167938 TCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACG 167997 |||| || ||||| ||| | |||||| ||| ||| | ||| ||||| || Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 167998 TGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 168057 | |||| |||||| ||| ||||||||||| |||||||| | ||||||||||| || Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTT 3609957 Query 168058 CTCTCGACCTTGCTG 168072 |||| ||||| |||| Sbjct 3609958 CTCTAGACCTAGCTG 3609972 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 169319 TCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGAC 169378 || ||| |||||||| |||||||| || ||| | ||| | |||||||| || |||||||| Sbjct 26735462 TCCTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGAC 26735521 Query 169379 GTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGA 169438 ||||||||||| || || || || ||||| ||| |||||| ||| | ||| || || Sbjct 26735522 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGTGTGGATGGCAGCTCAGGA 26735581 Query 169439 TCAACCT 169445 ||| ||| Sbjct 26735582 TCAGCCT 26735588 >seq2 Length=39559433 Score = 127 bits (140), Expect = 2e-24 Identities = 181/250 (72%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | | | |||| | ||| |||||| || | | ||| | || | |||||| Sbjct 19905532 GATGACTGGTTAAGAAGGGACCATTTTGTTTTTTATGAT-GATCTAGCGTTTTGCTTTTT 19905590 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||||||| | ||| | || |||||| |||| ||||| |||| || || |||| Sbjct 19905591 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 19905650 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAG 168672 ||||| || || ||||| ||||||||| |||| || |||| ||||||| | || |||| Sbjct 19905651 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 19905708 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 || || || || || | | | || ||| | |||| || ||||| || || |||| Sbjct 19905709 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCAGAAGCAC 19905768 Query 168733 AAGGGGATTT 168742 |||||||||| Sbjct 19905769 AAGGGGATTT 19905778 >seq9 Length=26294017 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 168925 TGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCC 168984 |||| ||||| ||||||| || || || ||| || || |||| || || |||||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 168985 TTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAG 169044 | |||||| | |||||||| ||||| ||||| |||| ||||||||||||||||| || | Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 169045 CAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTC 169104 | || | || || | || |||| | || |||||||| | || || || || |||| Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 169105 TGTATCAAGATGGTGA 169120 | | | | || ||||| Sbjct 19895331 TATTTGAGGACGGTGA 19895316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560607915908800