Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1 544 1e-149 seq7 361 7e-95 seq12 194 2e-44 seq9 113 6e-20 seq2 96.9 4e-15 >seq1 Length=46096743 Score = 544 bits (602), Expect = 1e-149 Identities = 730/1009 (72%), Gaps = 5/1009 (0%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 || |||||| ||| | | || || ||||| ||| | || |||||||| || | ||| || Sbjct 45923506 GACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTTTT 45923449 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 45923448 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 45923389 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGT 183371 |||||||||||| | || ||||||| | |||||| || ||||||| | || || || Sbjct 45923388 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCGGCAGT 45923330 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || ||||| | | | | || ||| | || |||| ||||| || || | || Sbjct 45923329 TTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCACA 45923270 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 |||||| ||| || ||||| ||| | || || || |||| |||||| || ||||| || Sbjct 45923269 AGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATGG 45923210 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 || ||||| || || ||||||||| | || || |||||||||||||| | || | Sbjct 45923209 GGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATT 45923150 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| ||| | |||||||| || || ||||||||||| ||||||| Sbjct 45923149 GCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATTCCT 45923090 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || ||||||||||| || || ||||||||| | || ||||| || |||||||| || Sbjct 45923089 GATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGCGAT 45923030 Query 183672 CTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATAT 183731 ||| ||||| | | ||| | || || || || || |||||||| ||||| || ||||| Sbjct 45923029 ATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 45922970 Query 183732 GATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGT 183791 |||||||||||| | || |||| | || || || | ||||| ||||| | || || Sbjct 45922969 GATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCAACTGT 45922910 Query 183792 AGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCAC 183851 || || || | | ||| || || || ||||| || ||| || ||| | | || Sbjct 45922909 GGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAAC 45922850 Query 183852 TCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGG 183911 ||||| ||||| || ||||| ||||| || | ||||| || ||||| |||||||| || Sbjct 45922849 TCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCTTTGG 45922790 Query 183912 GGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGG 183971 ||||| ||| |||||| |||||||| || ||||||||| | ||||| || |||| || Sbjct 45922789 TGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACCGG 45922730 Query 183972 TCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTT 184031 | | ||| | | |||||||| | | || || ||||| || || ||||| ||||| || Sbjct 45922729 TTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATGACTT 45922670 Query 184032 TGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG-ACGTTCTACACAAAGA 184090 || || || ||| | ||||| ||||||| ||||||||| || |||||||| || | Sbjct 45922669 CGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACCAAAA 45922610 Query 184091 ACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGA 184150 | || ||| | || || || | ||||| ||| | ||| || ||||| || ||||| | Sbjct 45922609 ATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAA 45922550 Query 184151 ATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 || ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 45922549 ATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 45922501 Score = 307 bits (340), Expect = 1e-78 Identities = 375/512 (73%), Gaps = 6/512 (1%) Strand=Plus/Minus Query 183688 TTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGT 183747 ||| | || || || || || |||||||| ||||| || ||||||||||||||||| || Sbjct 13891746 TTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 13891687 Query 183748 ATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTAT 183807 || |||| | ||| || || | ||||||||||| | || ||||| || || | | Sbjct 13891686 GTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTATTC 13891627 Query 183808 GAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACG 183867 |||||||| || ||||| || ||| || ||| | | ||||||| ||||| || Sbjct 13891626 GAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACT 13891567 Query 183868 TATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAAT 183927 ||||| ||||| || || || || || ||||| |||||||| || ||||| ||| |||| Sbjct 13891566 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAAT 13891507 Query 183928 AAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCT 183987 || |||||||| || ||||||||| | ||||| || |||| ||| | ||| | | || Sbjct 13891506 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCT 13891447 Query 183988 ATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATC 184047 |||||| | |||| || ||||| || || ||||| ||||| || || || || ||| Sbjct 13891446 ATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 13891387 Query 184048 AGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAA 184107 | ||||| |||||||| ||||||||||| |||||||| || || || ||| | || || Sbjct 13891386 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAG 13891327 Query 184108 GGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAG 184167 || | ||||| ||| | ||| || ||||| || ||||| ||| ||||||| || ||| Sbjct 13891326 GGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAG 13891267 Query 184168 GAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||| || | ||||| ||||||| ||| Sbjct 13891266 GAG------CCACGTGGCAACGCTCTTTAATG 13891241 Score = 194 bits (214), Expect = 2e-44 Identities = 232/315 (74%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 183607 TTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCA 183666 || || || ||||||||||| || || |||||||||||||| ||||| || |||||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 183667 GCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTC 183726 || || ||| ||||| | | ||| | || || || || || |||||||| ||||| || Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 183727 CATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTC 183786 ||||||||||||||||| || || |||| | || || || | ||||| ||||| | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 183787 ACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGAT 183846 || || || || || | | ||| ||||| || ||||| || ||| || ||| | Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 183847 TCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATC 183906 | ||||||| ||||| || ||||| ||||| || || ||||| || ||||| |||||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 183907 TTCGGGGTTGCGTTT 183921 || || ||||| ||| Sbjct 15262456 TTTGGTGTTGCTTTT 15262442 >seq7 Length=31244610 Score = 361 bits (400), Expect = 7e-95 Identities = 374/490 (76%), Gaps = 0/490 (0%) Strand=Plus/Plus Query 182291 TATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGT 182350 |||| | || ||||| || || || ||||| ||||||||||| || |||||||| ||||| Sbjct 14634320 TATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGT 14634379 Query 182351 AGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTC 182410 ||| ||||||||||| ||||| || || ||||| ||||| ||||| ||||| || ||| Sbjct 14634380 AGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAG 14634439 Query 182411 ACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGA 182470 | || | || || ||||| | || || || | ||||||| || |||||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 182471 AGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATA 182530 |||||||| ||||| || || || || ||||| || || || || || ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 182531 CGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGG 182590 || || |||||||| ||||| || ||||||||| | ||||| |||||||| | || Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 182591 AATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTT 182650 || |||||||| || | ||| | || ||||| |||||||| ||||| ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 182651 CAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAA 182710 |||||| || | ||||| | || ||||| || |||| |||||||| ||| | | || Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 182711 CCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGA 182770 ||||||| ||||||||||||||| ||||| || ||||| || ||||||||||| ||||| Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 182771 TCTTGCTGCT 182780 || |||||| Sbjct 14634800 CCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 194 bits (214), Expect = 2e-44 Identities = 232/315 (74%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 182464 GTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCT 182523 ||||||| |||||||| ||||| || | | || ||||| || || || || || |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 182524 TCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 182583 ||||||| || || |||||||| ||||| || ||||||||| | ||||| ||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 182584 TTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTT 182643 | | || || |||||||| || | ||| | || ||| | |||||||| ||||| | Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 182644 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATG 182703 |||| || ||||| || | ||||| || ||||| || |||| || ||||| ||| Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 182704 TATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 182763 | | || |||||| ||||||||||||||| ||||| || | ||| || |||| || Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTT 3609957 Query 182764 CACTAGATCTTGCTG 182778 | ||||| || |||| Sbjct 3609958 CTCTAGACCTAGCTG 3609972 >seq9 Length=26294017 Score = 113 bits (124), Expect = 6e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 183637 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAG 183696 ||||||||||| || ||||| || |||||||| || ||| ||||| | | ||| | || Sbjct 19895497 TGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAA 19895438 Query 183697 GGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGA 183756 || || || || |||||||| ||||| || ||||||||||||||||| || || |||| Sbjct 19895437 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 19895378 Query 183757 GGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGA 183816 | || || || | ||||| ||||| | || || || || || | | ||| || || Sbjct 19895377 GCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGT 19895318 Query 183817 GA 183818 || Sbjct 19895317 GA 19895316 >seq2 Length=39559433 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 || |||||| | | | || || ||||| ||||| || |||||||| || | ||| || Sbjct 8166098 GACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 8166039 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 8166038 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8165979 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGT 183348 |||||||||||| | || ||||||| | |||||| Sbjct 8165978 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 8165943 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | | | || | ||||| ||| | | || ||| | | | ||| || Sbjct 19905532 GATGACTGGTTAAGAAGGGACCATTTTGTTTTT-TATGATGATCTAGCGTTTTGCTTTTT 19905590 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 19905591 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 19905650 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371 |||||||||||| | || ||||||| | |||||| || |||||| || ||||| || Sbjct 19905651 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCAGT 19905709 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || ||||| | | | | || ||| | || |||| ||||| || || | || Sbjct 19905710 TTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCAGAAGCACA 19905769 Query 183432 AGGGGACTT 183440 |||||| || Sbjct 19905770 AGGGGATTT 19905778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611695908245600