Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1 569 2e-157 seq7 309 3e-79 seq12 170 2e-37 seq9 111 2e-19 seq2 100 3e-16 >seq1 Length=46096743 Score = 569 bits (630), Expect = 2e-157 Identities = 741/1011 (73%), Gaps = 13/1011 (1%) Strand=Plus/Minus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 ||||||||| ||| | |||| ||||| |||||| | || |||||||| || | ||| || Sbjct 45923506 GACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTTTT 45923449 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| | ||| | || |||||| | || ||||| ||||| || || |||| Sbjct 45923448 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 45923389 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 166350 ||||| |||||| | || || ||| |||| ||| |||| ||||||| | ||||||| Sbjct 45923388 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCGGCAG 45923331 Query 166351 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTC 166410 |||| || || || || | | | || ||| | | || || ||||| || || || | Sbjct 45923330 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 45923271 Query 166411 AAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACG 166470 |||||||||| | ||||| ||| | || || || ||| | |||||||||||||| | Sbjct 45923270 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 45923211 Query 166471 GTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGT 166529 | |||||||| ||||| ||||||||| | || || |||||| | ||||| ||| | | Sbjct 45923210 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 45923151 Query 166530 ATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 166589 | || || || |||||||| | || ||||| || || ||||| || ||| | || Sbjct 45923150 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATTC 45923092 Query 166590 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 166649 || || || || ||||| ||||| ||||||| || | || ||| || || |||| Sbjct 45923091 CTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGCG 45923032 Query 166650 ATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCAT 166709 || || |||||| |||| ||| | |||||||| || || ||||| |||||||||||||| Sbjct 45923031 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 45922972 Query 166710 ATGATGGGTGTAGC-AG-GTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTA 166767 |||||||| || || || ||||| |||| || |||| | || || ||||| | | Sbjct 45922971 ATGATGGGAGTTGCCAGAGTATTA--GGTGCGGCTCTGCTATGCGCTATTCATGGGGCAA 45922914 Query 166768 CAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACT 166827 | || || |||||||| | | | || ||||| |||||||| ||| || || || Sbjct 45922913 CTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACC 45922854 Query 166828 CTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCT 166887 | ||||||| |||||||| ||||||||||| || | || |||| |||||| || |||| Sbjct 45922853 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCT 45922794 Query 166888 TCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTA 166947 | ||| |||| ||| ||||| | ||||| |||||||||||||| ||||| || || | Sbjct 45922793 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCA 45922734 Query 166948 TGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 167007 ||| | |||| ||| | || || | | || || ||||| ||||| ||||| |||| Sbjct 45922733 CCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATG 45922674 Query 167008 ACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGA-AACCTTCTATACC 167066 |||| |||||||| ||| | | ||||| | |||||||| ||||| || ||||| ||| Sbjct 45922673 ACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACC 45922614 Query 167067 AAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCAT 167126 || || ||||| || || |||||||| ||| | ||||||||| || ||||| |||||| Sbjct 45922613 AAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCAT 45922554 Query 167127 GAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 || | | | |||||||||| |||||||| || | || |||||||| ||| Sbjct 45922553 GAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 45922503 Score = 358 bits (396), Expect = 8e-94 Identities = 378/498 (76%), Gaps = 0/498 (0%) Strand=Plus/Minus Query 166653 TTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATG 166712 || |||| | |||||||| | |||||||| || || ||||| ||||||||||||||||| Sbjct 13891761 TTTCGATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATG 13891702 Query 166713 ATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTA 166772 ||||| || || || | | || | || |||| | || |||||||| | ||| ||| Sbjct 13891701 ATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTA 13891642 Query 166773 GAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACT 166832 || |||||||| | |||||||||| |||||||| ||| || || || | ||| Sbjct 13891641 GAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACT 13891582 Query 166833 CAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGT 166892 |||| |||||||| ||||||||||| || || ||||||| |||||| || ||||| ||| Sbjct 13891581 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGT 13891522 Query 166893 ATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGT 166952 |||| ||| ||||| | ||||| |||||||||||||| ||||| || || | ||| Sbjct 13891521 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGT 13891462 Query 166953 CTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTT 167012 | |||| ||| | || || | |||| || ||||| ||||| ||||| |||||||| Sbjct 13891461 TTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTC 13891402 Query 167013 GTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAAC 167072 |||||||| ||| | | ||||| || |||||||| ||||| || ||||| ||||| || Sbjct 13891401 GTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAAT 13891342 Query 167073 ATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGT 167132 ||||| || || |||||||| ||| | ||||||||| || ||||| |||||||| | | Sbjct 13891341 ATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAAT 13891282 Query 167133 TTCGTATTCCCTGAAGAG 167150 | |||||||||| ||| Sbjct 13891281 CTTATATTCCCTGAGGAG 13891264 Score = 190 bits (210), Expect = 2e-43 Identities = 231/315 (73%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 166587 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCA 166646 || || || || || ||||| ||||| ||||||| || || || ||| || || || Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 166647 GCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTT 166706 || || || |||||| |||| ||| | |||||||| || || ||||| ||||||||||| Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 166707 CATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTT 166766 ||||||||||| || || || | | || | || |||| | || || ||||| | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 166767 ACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGAC 166826 || || || |||||||| | | | |||||||| |||||||| ||| || || || Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 166827 TCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATC 166886 | ||||||| |||||||| ||||||||||| || || || |||| |||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 166887 TTCGGTATTGCGTTT 166901 || ||| |||| ||| Sbjct 15262456 TTTGGTGTTGCTTTT 15262442 >seq7 Length=31244610 Score = 309 bits (342), Expect = 3e-79 Identities = 365/492 (74%), Gaps = 4/492 (1%) Strand=Plus/Plus Query 165261 TATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGT 165320 |||| | || ||||| |||||||||||||| ||||||||||| || |||||| | || || Sbjct 14634320 TATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGT 14634379 Query 165321 TGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTC 165380 ||||| |||||||| || || || ||| |||||||||||| | || || || Sbjct 14634380 AGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAG 14634439 Query 165381 ACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AACTACGGTTATAAGTTTGGACAA 165438 | || | || || ||||||| || || | || | ||||| | ||||| ||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAA--TCCGCTAATGAGGGTTACAGATTTGGTCAA 14634497 Query 165439 GAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAA 165498 || |||||||| ||||| || || || || || || || || || || | || |||||| Sbjct 14634498 GAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAA 14634557 Query 165499 TACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTT 165558 || || || ||||| || ||||| | ||||||||| | || || |||||||||| Sbjct 14634558 TATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCA 14634617 Query 165559 GGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAAC 165618 || || |||||||||||| | ||| |||| || ||||| |||||||| ||||| ||||| Sbjct 14634618 GGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAAT 14634677 Query 165619 TTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTG 165678 |||||||| ||| | |||||||| || | || |||||||||||| | | Sbjct 14634678 TTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATC 14634737 Query 165679 AACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTC 165738 ||||||||| ||| ||||||||||| ||||| || ||||| |||||||||||||| || Sbjct 14634738 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 14634797 Query 165739 GACCTCGCTGCT 165750 ||||| |||||| Sbjct 14634798 GACCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 170 bits (188), Expect = 2e-37 Identities = 229/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 165430 TTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTC 165489 ||| | ||||| |||||||| ||||| || | | || || || || || || || | Sbjct 3609654 TTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTA 3609713 Query 165490 ATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 165549 || |||||||| || || ||||| || ||||| | ||||||||| | || || ||| Sbjct 3609714 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3609773 Query 165550 CCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAAC 165609 ||||||| || || |||||||||||| | ||| |||| || ||| | |||||||| ||| Sbjct 3609774 CCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAAC 3609833 Query 165610 GGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCT 165669 || ||||| || ||||| ||| | ||||||| || | | ||| |||||| Sbjct 3609834 GGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCT 3609893 Query 165670 GACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAAC 165729 || | | || |||||| ||| ||||||||||| ||||| || | ||| ||||||| Sbjct 3609894 GATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGT 3609953 Query 165730 TTCCCCCTCGACCTCGCTG 165748 || | || ||||| |||| Sbjct 3609954 TTTTCTCTAGACCTAGCTG 3609972 >seq9 Length=26294017 Score = 111 bits (122), Expect = 2e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 166603 TGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCC 166662 |||| ||||| ||||||| || || || ||| || || |||| || || |||||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 166663 TCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAG 166722 |||| ||| | |||||||| || || ||||| |||||||||||||||||||||| || | Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 166723 CAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTC 166782 | || | | || | || |||| | || || ||||| | || || || ||||||| Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 166783 TGTATCAAGATGGTGA 166798 | | | | || ||||| Sbjct 19895331 TATTTGAGGACGGTGA 19895316 >seq2 Length=39559433 Score = 100 bits (110), Expect = 3e-16 Identities = 175/250 (70%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 || |||||| | | | | || | ||| |||||| || | | ||| | || | ||| || Sbjct 19905532 GATGACTGGTTAAGAAGGGACCATTTTGTTTTTTATGAT-GATCTAGCGTTTTGCTTTTT 19905590 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| | ||| | || |||||| | || ||||| ||||| || || |||| Sbjct 19905591 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 19905650 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 166350 ||||| |||||| | || || ||| |||| ||| |||| ||||||| | || |||| Sbjct 19905651 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 19905708 Query 166351 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTC 166410 |||| || || || || | | | || ||| | | || || ||||| || || || | Sbjct 19905709 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCAGAAGCAC 19905768 Query 166411 AAGGGGATTT 166420 |||||||||| Sbjct 19905769 AAGGGGATTT 19905778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563660715450880