Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq7 280 2e-70 seq12 152 6e-32 >seq7 Length=31244610 Score = 280 bits (310), Expect = 2e-70 Identities = 350/480 (73%), Gaps = 0/480 (0%) Strand=Plus/Plus Query 170188 ATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTT 170247 ||| | |||||||| ||||| || ||||| |||||||| ||||| || ||| ||| || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 170248 GCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCT 170307 |||||| | ||||| || | || ||| || ||||| ||||| | ||||| ||| | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 170308 CTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAA 170367 | ||||| || || || || ||||| || || | || |||| ||| || ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 170368 GAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATAT 170427 ||||| || || || ||||| || || ||||| || ||||| || | |||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 170428 GCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGC 170487 ||||| |||||||| |||| | | ||||||||| | ||| | | ||||||| | | Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 170488 ATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTC 170547 || ||||| ||| | | |||||| | || ||||| || ||||| || ||||| || ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 170548 AACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAAC 170607 ||||| || | || ||| | ||| || || ||| ||||| || | | ||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 170608 AGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 | || || || ||||||||||||||||| || |||||||| ||||||||||| || ||| Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 >seq12 Length=27944835 Score = 152 bits (168), Expect = 6e-32 Identities = 216/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 170350 TACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGT 170409 |||| ||| | ||||| ||||| || || || ||| | | || ||||| || ||||| Sbjct 3609648 TACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGC 3609707 Query 170410 AGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCT 170469 || | ||||||||||||||||| |||||||| |||| | | ||||||||| | ||| Sbjct 3609708 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3609767 Query 170470 ACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAAC 170529 | | ||||||| | | || ||||| ||| | | |||||| | || ||| | || ||| Sbjct 3609768 GCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAAC 3609827 Query 170530 CTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACA 170589 || || ||||| || || ||||| || | || ||| ||| || ||| ||| Sbjct 3609828 CTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACC 3609887 Query 170590 TGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCA 170649 ||||| || | | || | || || || ||||||||||||||||| || | |||||| Sbjct 3609888 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCT 3609947 Query 170650 CACA 170653 |||| Sbjct 3609948 CACA 3609951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582847912572800