Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq7 352 3e-92 seq12 197 2e-45 >seq7 Length=31244610 Score = 352 bits (390), Expect = 3e-92 Identities = 362/473 (77%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 14634793 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACGGTTGATG 14634734 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| || Sbjct 14634733 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTG 14634674 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || || || || ||||| || |||| ||| | ||||| |||||||| || | Sbjct 14634673 AATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTGCT 14634614 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| ||||| | ||||||| ||||| || |||||| ||| Sbjct 14634613 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGG 14634554 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || |||||||||||||| || || |||||| Sbjct 14634553 AAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGA 14634494 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || | ||||| || ||||| | ||| | | ||| Sbjct 14634493 CCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAG 14634434 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 14634433 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCT 14634374 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCAT 84457 ||||||||||| ||||||||||||||||||||||| |||||||| |||| ||| Sbjct 14634373 AACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCCTGGAATACAATCAT 14634321 >seq12 Length=27944835 Score = 197 bits (218), Expect = 2e-45 Identities = 219/292 (75%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 83994 TGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCC 84053 || || ||| |||||||||| |||||||||||||| |||||||| | | ||| ||| Sbjct 3609949 TGAGCATTATGTTCGTGCATTACTTCCATACCAAGATTAGCACGATTGATGATATCAGCC 3609890 Query 84054 CAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTC 84113 |||||||| ||||| || |||| |||| || | | || || || || ||||| || Sbjct 3609889 CAGGTATTAACAACGCGACCTTGGTTATCAACTACAGATTGGTTTAAATTGAATCCGTTT 3609830 Query 84114 AGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAA 84173 || || || | ||| || |||| ||| | ||||| |||||||| || | || |||||| Sbjct 3609829 AGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTGCTACAGGCCAA 3609770 Query 84174 GCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGA 84233 ||||||||||| ||||| | ||||||| ||||| || |||||| |||||||| | Sbjct 3609769 GCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATTAAT 3609710 Query 84234 CGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGAC 84285 || || || || || ||||| | | |||||||||||| || || ||||||| Sbjct 3609709 CGGCCAAAATAACCATGAGCGGTCATAATATTATAAGTCTCTTCCTCTTGAC 3609658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571273514308960