Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-12 >seq3 Length=38925377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 126591 CGTATACCAGAAATTGGAGACAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 126649 ||||||||| | |||||||| || ||| || | || |||| | | ||||||||| || Sbjct 27434895 CGTATACCACAGATTGGAGATAAGTTTAGTAGTAGGCATGGTC-AGAAAGGAACTGTGGG 27434953 Query 126650 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCAGGTATGACCCCCGATATTAT 126709 |||| |||| ||||||| || ||||||| || ||| || || || |||||||| Sbjct 27434954 AATGACTTATACACAAGAGGACATGCCGTGGACTATTGAAGGCATCACACCTGATATTAT 27435013 Query 126710 AATTAATCCAAATTGTATACCGTCAAGAATGACCATAAATCAAATAATTGCAACTGTTAT 126769 | |||||| || ||| || || | ||||| || |||| | |||| | |||| Sbjct 27435014 TGTGAATCCACATGCTATTCCATCTCGTATGACTATTGGTCAACTGATTGAGTGTATTAT 27435073 Query 126770 GGGTAAA 126776 ||||||| Sbjct 27435074 GGGTAAA 27435080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658403101239520