Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 109 6e-19 >seq2 Length=39559433 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | | ||| || ||||| ||| Sbjct 38035716 CCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGCAGCATGGGAACAATCCCA 38035657 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| ||||| ||| ||||||| ||||| |||||| Sbjct 38035656 TTAGATGTTCCATTTGTCCCTCGAATGTAACTCCCAGTAGCTCTAATATTGTGAATTGAG 38035597 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| | ||||| || ||| ||| |||||| | || |||||||||||| Sbjct 38035596 ACACCAACTCCACCAGCACATTTGCTTATGGTAGCACATTCTGAGAGAGTATCATAAATT 38035537 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 38035536 CCCTCAATACTATCATCTTTCAT 38035514 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 38035400 AGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 38035341 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| ||| |||| || ||||| | ||| ||||| || ||||| || | ||||| Sbjct 38035340 GTATGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCATTA 38035282 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| || |||||||| |||| || | | ||| || ||||| ||| | || | Sbjct 38035281 GCATATGCTGTGGTCTTTCCACAACCTTTCCACCAACTTTTAACAGATAAGATCTCTCAA 38035222 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || ||||||||||| |||| || ||| || | |||| ||| || Sbjct 38035221 GGGTCTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATAAATTAT 38035173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108715683680