Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12 105 5e-17 seq5 105 5e-17 seq3 102 7e-16 seq2 98.7 8e-15 >seq12 Length=27944835 Score = 105 bits (116), Expect = 5e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| || ||||| || ||||||||||| | ||| | Sbjct 7454138 AAATTACAAAAGCAGTGGTTACTGTTCCGGCATACTTCAATGACTCACAGAGGACAGCAA 7454197 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| |||||||| ||| | | ||||| || ||||| ||||| || |||| Sbjct 7454198 CAAAAGATGCTGGGCGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCGACTG 7454257 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| ||||| |||| || Sbjct 7454258 CTGCATCCCTTGCTTATGGTTTTGAGAA 7454285 >seq5 Length=31082981 Score = 105 bits (116), Expect = 5e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || || |||||||| |||||||||||| | ||| | Sbjct 13158750 AAGTCACAAAGGCAGTGATCACAGTCCCTGCATATTTCAATGACTCACAAAGGACAGCAA 13158691 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| ||||| || ||||| || |||| Sbjct 13158690 CAAAAGATGCTGGCCGGATTGCTGGGTTGGAAGTTCTCCGTATCATAAATGAGCCCACTG 13158631 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | | |||||||| |||| || Sbjct 13158630 CTGCATCTTTGGCATATGGGTTTGAAAA 13158603 Score = 91.5 bits (100), Expect = 1e-12 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 || ||| ||||| |||||||||||||| ||| | ||| || ||||| ||||| ||| Sbjct 26219444 CCGGAGGCGGAGGACAAGATGAAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGCAAGA 26219387 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || ||||| || || | ||||| || ||||| ||| Sbjct 26219386 GTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATT 26219327 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTC 563429 || || || || || ||||| || || ||||| ||||| | | || | | || Sbjct 26219326 CCCTCCTTGTCCTGGATTTTGGCCTTGACGTTATCAATGGTATCCGAG-GACTCAACCTC 26219268 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| ||||| || ||||| || ||||| Sbjct 26219267 AAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 26219223 >seq3 Length=38925377 Score = 102 bits (112), Expect = 7e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| |||||| | || ||||| ||||| || |||||| Sbjct 649726 GCTGTGATTACTGTTCCAGCTTATTTCAATGACGCTCAGCGTCAGGCTACCAAGGATGCT 649667 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || || ||||| ||| |||| | | || ||||||||||| |||||||| || || Sbjct 649666 GGTCGCATCGCTGGGCTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCCGCTCTG 649607 Query 550520 GCATATGGA 550528 | |||||| Sbjct 649606 TCTTATGGA 649598 >seq2 Length=39559433 Score = 98.7 bits (108), Expect = 8e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||||||||| | || ||||| || || || |||||| Sbjct 36487474 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCGACCAAGGATGCT 36487415 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 || || |||||||||||| |||| | | || |||||||| || ||||||||||| || Sbjct 36487414 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAGCCAACTGCTGCTGCTCT 36487356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295365385880