Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq7 304 4e-78 seq12 179 1e-40 >seq7 Length=31244610 Score = 304 bits (336), Expect = 4e-78 Identities = 367/496 (74%), Gaps = 10/496 (2%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 14634809 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 14634750 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || |||||||| | || ||| |||||||| || | | ||| |||| ||||| Sbjct 14634749 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 14634693 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| || || ||||||||||| || || | || Sbjct 14634692 TACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGC 14634633 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | | || ||||||| ||||| |||||| |||||| ||| || Sbjct 14634632 AGTGAACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 14634573 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 |||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| || Sbjct 14634572 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 14634513 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAGTT 5545 ||| || ||||||||||| || ||| | || || | || | || || |||| Sbjct 14634512 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGT--TTTCAGTG 14634455 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | ||| || || | |||||||||||| ||| | | || Sbjct 14634454 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCG 14634395 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 |||||||| ||||| ||||| | |||||| || |||||||||||||| || ||||||||| Sbjct 14634394 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCC 14634335 Query 5666 TGGAATACGAACATAA 5681 |||||||| | ||||| Sbjct 14634334 TGGAATACAATCATAA 14634319 >seq12 Length=27944835 Score = 179 bits (198), Expect = 1e-40 Identities = 229/314 (73%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || | || |||||||||| ||||||||||||||||||||||||| || Sbjct 3609970 GCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGATTA 3609911 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACT 5311 ||||| || | || ||| ||||| || ||| | | ||| | || ||||| || Sbjct 3609910 GCACGATTGATGATATCAGCCCAGGTATTAACAACGCGACCTTGGTTA---TCAACTACA 3609854 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || || || || || ||||| || || |||| |||||| || || | || || Sbjct 3609853 GATTGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTG 3609794 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | | || ||||||| ||||| |||||| |||||| ||| |||||| Sbjct 3609793 AACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTA 3609734 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || |||||||| |||||||| | || ||||| || |||||||| | | ||| ||||| Sbjct 3609733 AAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTATAA 3609674 Query 5492 GTTTCTTCCTCTTG 5505 || ||||||||||| Sbjct 3609673 GTCTCTTCCTCTTG 3609660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649578247432