Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq7 268 3e-67 seq12 156 1e-33 >seq7 Length=31244610 Score = 268 bits (296), Expect = 3e-67 Identities = 356/490 (73%), Gaps = 6/490 (1%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | | Sbjct 14634805 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 14634746 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | | |||||| || || Sbjct 14634745 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 14634686 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| || || ||||||||||| | || | ||| || | | Sbjct 14634685 TGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 14634626 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | | || ||||||||||||| |||||| |||||| ||| || ||||| Sbjct 14634625 CAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 14634566 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 14634565 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 14634506 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || ||||| |||| ||||| | Sbjct 14634505 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTCCCTG 14634446 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 14634445 ATCAAACTAGAGG--TTACCAAG-GAACCATGCATAGCACTGAATAGGGAACCGCCGAAT 14634389 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | ||| || || |||||||||||||| || ||||||||||| || Sbjct 14634388 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCCTGGAAT 14634329 Query 25930 ACAAACATAA 25939 |||| ||||| Sbjct 14634328 ACAATCATAA 14634319 >seq12 Length=27944835 Score = 156 bits (172), Expect = 1e-33 Identities = 221/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||| || |||| || ||| | || ||||| |||||||| || | | Sbjct 3609970 GCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGATTA 3609911 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||||| || | || |||||||| || || || | || | | |||||| || || Sbjct 3609910 GCACGATTGATGATATCAGCCCAGGTATTAACAACGCGACCTTGGTTATCAACTACAGAT 3609851 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || || || || || ||||| || || |||| |||||| | || | ||| || | | Sbjct 3609850 TGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTGAAC 3609791 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | | || ||||||||||||| |||||| |||||| ||| || ||||| Sbjct 3609790 CAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 3609731 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| | | ||| ||||| ||| Sbjct 3609730 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTATAAGTC 3609671 Query 25753 TCTTCTTCTTG 25763 ||||| ||||| Sbjct 3609670 TCTTCCTCTTG 3609660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993578340912