Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2 131 1e-25 seq5 100 2e-16 seq6 96.9 3e-15 >seq2 Length=39559433 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || |||||||||||||| || || || || ||||||||||| Sbjct 31556147 CCTCCACGAAGACGGAGGACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 31556206 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| |||||| || ||||| || | | ||| || || || || Sbjct 31556207 AATGTGCGCCCATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGG 31556266 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || |||||| || ||| | || | |||||||| | |||||| Sbjct 31556267 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCCACT 31556326 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | || ||||| || | ||| || ||||| |||||||| Sbjct 31556327 TCCAGAGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 31556373 >seq5 Length=31082981 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| || || || |||||||| || | || | | |||| || | ||||| || Sbjct 9800950 GTGGATTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGGCCATCCTCGAGCTGCTTGCCA 9801009 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| |||| ||||| ||||| || ||||||||||| || || ||||| ||| ||| Sbjct 9801010 GCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCTTTC 9801069 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || | || | ||||| |||| || || || || || | ||||||||||| Sbjct 9801070 ACGTTGTCAATCGTGTCTGACGACTCAACCTCCAGGGTAATGGTTTTGCCGGT 9801122 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || || | || | ||| | ||||||||||| || || || || ||||| |||| Sbjct 26219907 TTCCACCCCTAAGGCGCAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 26219848 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | || | | |||| |||| ||||| || || || || | | ||| || || || | Sbjct 26219847 CAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGTCTCTGCTGGTCTGGGG 26219788 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||| ||||| || || || || || || | || | ||||| || | || | Sbjct 26219787 GGATGCCCTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCAATCGTGTCTGATGACTCGA 26219728 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| |||| || ||||| || | || || || || |||||||| Sbjct 26219727 CCTCAAGCGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 26219679 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| |||||||| || || || || |||||||| || || | || | | || || Sbjct 9801157 ACTAGGTGAAGGGTTGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTCG 9801216 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | ||||| || || || ||||||||||| || || || Sbjct 9801217 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGG 9801276 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | ||||| || | || || || | |||| || ||| Sbjct 9801277 ATCTTCGCCTTCACGTTGTCGATTGTGTCTGATGACTCGACCTCTAATGTGATGGTCTTG 9801336 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || ||||| ||||||||| Sbjct 9801337 CCAGTTAAGGTCTTGACAAAAATCTGCATG 9801366 >seq6 Length=34615992 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || || || || || ||||| || |||| || | | |||| || | ||||| || Sbjct 31537560 GGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCCATCCTCAAGCTGCTTGCC 31537619 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 || || ||||| ||||| || || || ||||||||||| || || ||||| || || Sbjct 31537620 GGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGAATCTTCGCCTT 31537679 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | || ||||| | || || ||||| || | || |||||||| | || Sbjct 31537680 CACATTGTCGATCGTATCAGAAGACTCAACCTCAAGCGTAATGGTCTTGCCGGTCAGGGT 31537739 Query 101452 TTTTACAAATATCTGCAT 101469 || ||||| || ||||| Sbjct 31537740 CTTGACAAAGATTTGCAT 31537757 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| || || || || ||||| ||||| | || | | |||| || | ||| Sbjct 32009444 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGC 32009385 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || || || || ||||| || || || || || || Sbjct 32009384 TTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 32009325 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || || |||| ||||||||||| Sbjct 32009324 GCCTTGACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTTTTGCCGGTG 32009265 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 32009264 AGGGTCTTCACAAAGATCTGCAT 32009242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| ||||| || || || ||||||||||| | || | | | || |||| || Sbjct 32009901 ATGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCCAGCTG 32009842 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | |||||| || || || || ||||| || || || || || || Sbjct 32009841 CTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 32009782 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | |||||||||| || || || || |||| || ||||| || Sbjct 32009781 GGCCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 32009722 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || || ||||||||| Sbjct 32009721 CAGGGTCTTCACGAAGATCTGCATG 32009697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278342044284