Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-21 seq5 109 4e-19 seq1 91.5 1e-13 seq2 82.4 6e-11 >seq6 Length=34615992 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | |||||| || || ||| ||| || || || |||||||| | Sbjct 32010609 GCCGCCACGGAGGCGGAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCCGC 32010550 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | ||||||||| ||||||||||| ||||| || |||| ||| Sbjct 32010549 AAGGGTACGGCCATCCTCAAGCTGCTTACCAGCAAATATCAGACGCTGCTGGTCCGGGGG 32010490 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || ||| | | || || |||| ||| || Sbjct 32010489 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATAGTGTCGGACGACTCAAC 32010430 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || || || |||| || || ||||| ||||||||| Sbjct 32010429 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATC 32010381 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || | | ||| | || || ||| ||| || ||||| |||||||||| Sbjct 31537759 CCACCCCTAAGTCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 31537818 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | |||| || | |||||| |||||||| || || ||||| ||||| | || Sbjct 31537819 AGGGTCCTACCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGG 31537878 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | | || || | ||| ||| Sbjct 31537879 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGAGGACTCGACC 31537938 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| ||||| || || ||||| |||||||| Sbjct 31537939 TCAAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 31537985 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| | ||| | ||| || ||| ||| || || || ||||| || | Sbjct 32009697 GCCTCCCCTGAGCCTGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 32009638 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| || || || || || ||||| || || | ||| Sbjct 32009637 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 32009578 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || | | | || |||| ||| || Sbjct 32009577 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGACGACTCGAC 32009518 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || ||||| ||||| || || || || |||||||| Sbjct 32009517 CTCAAGGGTGATGGTCTTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 32009470 >seq5 Length=31082981 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| | ||| | || || ||| ||| || ||||| |||||||||| Sbjct 9801366 GCCACCCCTGAGCCTTAGCACGAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGC 9801425 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| || | |||||| ||||| || || || ||||| || |||| || Sbjct 9801426 CAGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGG 9801485 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || || | ||| || Sbjct 9801486 GATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCGGAAGACTCGAC 9801545 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | |||||| || || || |||| || || || ||||||||||| Sbjct 9801546 CTCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 9801593 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| |||| | ||| | ||||| ||| |||||| ||||| ||||| || | Sbjct 9801594 GCCTCCCCTCAGCCTAAGCACAAGGTGTAGAGTGGACTCTTTCTGAATGTTGTAGTCTGC 9801653 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | ||| | || || | |||||| || || || || || ||||||||||| | ||| Sbjct 9801654 CAAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGATCTGGGGG 9801713 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||| || || | | | ||||| | ||| || Sbjct 9801714 GATACCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCTGAGGACTCAAC 9801773 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || ||||| ||||| || || ||||| |||||||| Sbjct 9801774 CTCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 9801821 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | || || ||| ||| || || || ||||| |||| Sbjct 26219677 CCTCCCCTGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 26219618 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || || | |||||| || ||||| ||||| ||||| || || | |||| Sbjct 26219617 AGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGA 26219558 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | | || || | ||||||| Sbjct 26219557 ATGCCCTCCTTGTCCTGGATCTTTGCCTTAACATTGTCAATGGTATCAGAGGACTCCACC 26219498 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || ||||| ||||| || || ||||| || ||||| Sbjct 26219497 TCAAGGGTGATAGTCTTTCCGGTCAAGGTCTTGACAAATATTTGCAT 26219451 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||||| || || || ||| || || || ||||| || | Sbjct 26220133 CCACCCCTGAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCA 26220074 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| ||||||||| || || || |||| ||| || |||| ||| Sbjct 26220073 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGG 26220014 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || ||||| || || | | | ||||| ||| ||| Sbjct 26220013 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACC 26219954 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || | ||| || || ||||||||||| Sbjct 26219953 TCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 26219907 >seq1 Length=46096743 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| | || || | ||||| || || ||| ||| || || || ||||| || | Sbjct 12788210 CGCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 12788269 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| |||| |||||| ||||| || || || ||||| || |||| || Sbjct 12788270 CGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGG 12788329 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | || |||||||| ||||| || || | | | || || | ||||| Sbjct 12788330 GGATCCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 12788389 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || ||||||| || || || || ||||||||| || Sbjct 12788390 CCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 12788442 >seq2 Length=39559433 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||| || || || ||||| || | || | ||| Sbjct 2778461 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 2778520 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| || || | ||||| |||||| Sbjct 2778521 CCATCCTCCAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCTGGGGGAATCCCCTCC 2778580 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | | || || ||| ||||||| || Sbjct 2778581 TTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGAGTG 2778640 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || |||||||| Sbjct 2778641 ATGGTCTTCCCAGTCAAGGTCTTAACGAAGATCTGCAT 2778678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937544287876