Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq7 347 1e-90 seq12 192 6e-44 >seq7 Length=31244610 Score = 347 bits (384), Expect = 1e-90 Identities = 373/492 (76%), Gaps = 6/492 (1%) Strand=Plus/Plus Query 162997 ATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTC 163056 ||| | || ||||| ||||| || |||||||| ||||| || || || ||| | || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 163057 GCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCT 163116 || ||||||||||| ||||| || || ||||||||||| ||||| | || || ||| | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 163117 CTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAA 163176 | ||||| ||||| ||||| | || || || | ||||| | || || ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 163177 GAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236 ||||||||||| || ||||| || |||||||| || ||||| || || |||||||| ||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 163237 GCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGC 163296 || ||| |||||||| ||||| | ||||||||| | ||||| | ||||| | | Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||||||||| | ||| | |||||||| |||||||| ||||| ||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 163357 AACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 |||||||| || ||||| | |||| | || ||| ||||||||| |||||| | Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATC 14634737 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTT 163473 ||| | || |||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 14634738 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 14634797 Query 163474 GACCTTGCTGCT 163485 ||||| |||||| Sbjct 14634798 GACCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 192 bits (212), Expect = 6e-44 Identities = 233/316 (74%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 163171 CAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTC 163230 ||||| ||||||||||| || ||| | | |||||||| || ||||| || || |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 163231 CAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTG 163290 || ||||| ||| |||||||| ||||| | ||||||||| | ||||| | ||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 163291 GTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTC 163350 | | || ||||||||||| | ||| | |||||| | |||||||| ||||| ||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 163351 AACTTCAACCAATCCGTCGTTG---ACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGAT 163407 || || |||||||| || |||| || |||| | || || ||| ||||| ||| Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCG---CGTTGTTAATACCTGGGCTGAT 3609896 Query 163408 ATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 163467 ||| | || | || |||||||||||||| |||||||| | ||||||||||| || Sbjct 3609897 ATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTT 3609956 Query 163468 CCACTTGACCTTGCTG 163483 | || ||||| |||| Sbjct 3609957 TCTCTAGACCTAGCTG 3609972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553084717037280