Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 239 8e-58 >seq6 Length=34615992 Score = 239 bits (264), Expect = 8e-58 Identities = 576/864 (67%), Gaps = 21/864 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 8272695 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 8272754 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | || ||| || | | || Sbjct 8272755 CATCCAGTCGAAAGGGTTGGCGACGTTGTACATCTTCTTG-CAG-CCGAGCGCCATGAGG 8272812 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | ||||||| | ||||||||| | ||| Sbjct 8272813 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 8272872 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| |||| || | ||||| || | || ||| Sbjct 8272873 GCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATC 8272932 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | || |||| ||| | | ||| ||| ||| | | | || || | |||||| Sbjct 8272933 TCGCGGACACGGGCCTCGTCGAGCTTGCCGCGGAGGAGTTCG---TATAGGAGGCAGGCG 8272989 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 8272990 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 8273049 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| |||| || |||||||| || || || ||| || || ||||||||||| ||| Sbjct 8273050 ATGAGGCCCCGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAACCCGAGAAGAAGATCCCC 8273109 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||| ||| ||| | ||| | |||||| || | | |||||| Sbjct 8273110 TCGACGCAAGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 8273165 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA- 48374 | | ||||| || ||||| || | || | || || ||||| ||||||| Sbjct 8273166 GCGCATGGCCCATTCAGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCGCGGAAGAG 8273225 Query 48375 --GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | ||| ||| | |||| | ||||| ||||||| | ||||||||| Sbjct 8273226 GCGGTCCTT---CTCGGCGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTC 8273282 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||| ||||||||||| | ||||| ||||| Sbjct 8273283 GGAGTGGATGTTCTCGATGGCGATCTGGAATCCGTAGAAGGCGCGTGCCTCGGCGACCTG 8273342 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || | ||| || || ||||| || || || || || ||||| || Sbjct 8273343 CACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCAGCGAA 8273402 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCCAGCC 48609 |||||| || || || | ||| |||||||||| | ||| ||| || | |||| Sbjct 8273403 GAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGAGAGCGCGGCGTCCCAGTG 8273462 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 | |||| | ||||| || || ||| | |||||||| ||||| | || || || Sbjct 8273463 GCGCGCGTCGGCGGAGAGGTCGACCTCCTCCGCCGTCCAGAACGACGCCACCGCCTTCTT 8273522 Query 48670 GTACATGCCCCATATGTCCGGATA 48693 ||| | |||| || | ||| || Sbjct 8273523 GTAGAACTCCCAGATCTGCGGGTA 8273546 Score = 206 bits (228), Expect = 5e-48 Identities = 577/874 (66%), Gaps = 41/874 (5%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 934172 CTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 934113 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTG--TCAG-GC-CCATCTGTTC 47952 ||| || ||| ||||||| || |||| | | || || | || |||| | Sbjct 934112 CATCCAGTCGAACGGGTTGGCGACATTGTACATCTTCTTGCATCCGAGCGCCATGAG--- 934056 Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 |||| ||| | |||||| |||||||||| | |||||| | |||||| || | Sbjct 934055 CAGCCGGT---CGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGAC 933999 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| | ||||| | || | || |||||| |||| || | ||||| || | || Sbjct 933998 GAGCGCGACGGGGAGCGCATCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGAC 933939 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || | | ||||| | ||| | | ||| ||| ||| | | | ||||| | ||| Sbjct 933938 GATGTCTTGGACGCGCGCCTCATCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCA 933882 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || ||||| | ||| | || ||||| ||| ||||||| ||||||||||| ||| || Sbjct 933881 AGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCC 933822 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||||| |||| || ||||||||||| || || ||| ||||| ||||||||||| Sbjct 933821 CGGCATGAGTCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAGAAGAT 933762 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGA 48311 ||||| || ||||| || ||| | ||| | |||||| || | | || Sbjct 933761 CCCCTCGACGCAGGCGAAGGCCACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGA 933706 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCC 48367 |||| | |||||||| ||||| | ||| ||| | || || ||||| Sbjct 933705 TCCACCGCATGGCCCAGTCAGCCTT----GCGGCGCACGGCGGGGACGGTGTCGATGGCG 933650 Query 48368 CGGAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCG 48424 ||||||| | | ||| ||| | |||| | ||||| ||||||| | | Sbjct 933649 CGGAAGAGGCGATCCTT---CTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAG 933593 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 |||||||| ||||| | ||||| || ||||||||||| || ||||| || | ||||| Sbjct 933592 TACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGAATCCATAGAACGCGCGTGCCTCG 933533 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 |||||||| || | ||| || || ||||| || || ||||| || Sbjct 933532 GCGACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACAATGCCATCGGAG 933473 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA-----G 48599 || || |||||||| || || || | ||| |||||||||| |||||| | | Sbjct 933472 GCCGCGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGT--CGGGTGACAGCGCGG 933415 Query 48600 CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGA 48659 | | |||| | |||| | |||||||| || ||| | |||||||| ||||| | Sbjct 933414 CGTCCCAGTGGCGCGCGTCGCCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCA 933355 Query 48660 GTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 ||| || ||||| | |||| || | ||| || Sbjct 933354 CTGCCTTCTTGTAGAACTCCCAGATCTGCGGGTA 933321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532660270080