Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 206 5e-48 >seq6 Length=34615992 Score = 206 bits (228), Expect = 5e-48 Identities = 494/736 (67%), Gaps = 24/736 (3%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| ||||| || ||| |||||| || | || | Sbjct 933451 ACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATTGTGCTCGAGAACCTCGCCTCCAGGT 933510 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTTCCAGATGGCCATC 25713 ||| || |||||| || ||||| | | | ||||| || |||||||| |||||| Sbjct 933511 TCATGTCCGACGTGCAGGTCGCCGAGGC-ACGCGCGTTCTATGGATTCCAGATCGCCATC 933569 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||| || ||| ||||| |||| || | Sbjct 933570 GAGAACATCCACTCGGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGTC 933629 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 |||| ||||| || || | |||||||| | | ||| | | | ||||| Sbjct 933630 GAGAAGGATCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCTGAC 933689 Query 25834 TGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||||||| ||||||| || || ||||||| || |||||| || || ||||| Sbjct 933690 TGGGCCATGCGGTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTGGCCTT 933745 Query 25893 TGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 || ||| || ||||| ||||| ||| || || || |||| ||||||||||||||||| Sbjct 933746 CGCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCATTCTGCG-CCATCTTCTGGCTCAAG 933803 Query 25951 CAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || |||||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 933804 AAG-CGGGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 933862 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 ||||||| | || || || ||||| |||||| | || | | | | ||| | | | Sbjct 933863 TCTCCACTGCGACTTCGCTTGCCTCCTCTAC---GACCTCCTCCGCGGCAAGCTCGATGA 933919 Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 | | |||| | ||| || || || || || ||||||| |||||| Sbjct 933920 GGCGCGCGTCCAAGACATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGA 933979 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | || |||||| | ||||||||||| ||||| |||| Sbjct 933980 TGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTT 934039 Query 26190 TGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACAGT-ACGCCTA 26245 || ||||||| ||||| || | ||| ||| || ||| | |||| | |||| | Sbjct 934040 CGTCGCCGACCGGCTGCTCATGGC-GCTCGGA--TGCAAGAAGATGTACAATGTCGCC-A 934095 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||||||||||| ||||| ||| || || | || |||||||||||||| || ||| Sbjct 934096 ACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGC 934155 Query 26306 GGGTCGGCGACTATCA 26321 | ||||||||||| || Sbjct 934156 GTGTCGGCGACTACCA 934171 Score = 181 bits (200), Expect = 2e-40 Identities = 563/859 (66%), Gaps = 31/859 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| || || ||| | || || Sbjct 8273537 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTCGACCTC 8273478 Query 25537 GCCAAGGACATGGACGGCTGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| | ||| || ||| ||||||| || || || Sbjct 8273477 TCCGCCGACGCGCGCCACTGGGACGCCGCGCTCTCCCCCGACGAGCGCCACTTCATCTCC 8273418 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 8273417 CACGTGCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 8273358 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCAT 25712 |||| || |||||| || |||| || | | |||||||| |||||||| ||||| Sbjct 8273357 TTCATGTCCGACGTGCAGGTCGCCGAGG-CACGCGCCTTCTACGGATTCCAGATCGCCAT 8273299 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 ||| || | ||||| ||| |||| | ||| || ||| ||||| |||| ||| Sbjct 8273298 CGAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGACGC 8273239 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| || || || || | |||||||| | | ||| | || | ||||| Sbjct 8273238 CGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTCCGCCGCAAGGCTGA 8273179 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||| || || |||||| || | |||||| || || |||| Sbjct 8273178 ATGGGCCATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCT 8273123 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 | ||| || ||||| ||||| ||| ||||| || ||| |||||||| ||||||||| Sbjct 8273122 TCGCTTGCGTCGAGGGGATCTTCTTCTCGGGTTCCTTCTGC-GCCATCTTTTGGCTCAAG 8273064 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 8273063 AAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 8273004 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 || ||| | || || |||||||| || ||| | | | | | | ||| | || | Sbjct 8273003 CTGCACTGCGACTTCGCCTGCCTCCTATAC---GAACTCCTCCGCGGCAAGC--TC-GAC 8272950 Query 26071 GAGACC---GTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 ||| || ||| | ||| || || || || || ||||||| |||||| Sbjct 8272949 GAGGCCCGTGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGC 8272890 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| | ||||||||||| ||||| ||| Sbjct 8272889 GACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAG 8272830 Query 26188 TATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACGC 26242 | || ||||||| || || || | ||| || || || ||| | |||| || ||| Sbjct 8272829 TTCGTCGCCGACCGCCTCCTCATGGC-GCTCGG-CT-GCAAGAAGATGTACAACGT-CGC 8272774 Query 26243 CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAA 26302 | ||||| ||||||| ||||| ||| || || | || |||||||||||||| || | Sbjct 8272773 C-AACCCTTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGA 8272715 Query 26303 AGAGGGTCGGCGACTATCA 26321 || | ||||||||||| || Sbjct 8272714 AGCGCGTCGGCGACTACCA 8272696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844660673280