Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1 515 4e-141 seq7 289 3e-73 seq12 152 5e-32 seq9 147 2e-30 seq2 87.8 2e-12 >seq1 Length=46096743 Score = 515 bits (570), Expect = 4e-141 Identities = 716/999 (72%), Gaps = 3/999 (0%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | || |||||| ||| | |||| || ||||||||| | || |||||||| Sbjct 45923518 TTTGATATTATGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | |||||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || |||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 45923341 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 || ||||| || || || ||||| || | | | || ||| | | ||||| ||||| Sbjct 45923340 ACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 45923281 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 || || | || || ||||| || ||| || | || || || ||| ||||||| Sbjct 45923280 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 45923221 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || ||||| || || || || |||| || || |||||||| || ||||| || || | Sbjct 45923220 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 45923161 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | || | | || ||||| ||||| || | || ||||| || || ||||||||||| Sbjct 45923160 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 45923101 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 | ||||| || |||||||| ||||| || ||||||||||| |||||||||| ||| Sbjct 45923100 TCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGC 45923041 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || || ||||| || || ||| | |||||| |||| || ||||||||||||||| | || Sbjct 45923040 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 45922981 Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414 || || ||||||||||||||||| | || | || | ||| || |||| || || || Sbjct 45922980 CCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCAT 45922921 Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474 || | ||||| |||||||| || | | | || || || ||||| || ||| ||| Sbjct 45922920 GGGGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCT 45922861 Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 ||| | ||||||| ||||| || ||||| ||||| || | ||| || || |||||| Sbjct 45922860 TTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCC 45922801 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594 || || ||||| |||||||| ||||||||| ||| | |||||||||||||| |||||| Sbjct 45922800 CAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTA 45922741 Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654 || || | ||| | |||| | ||||||| | | || || ||||| || || ||| Sbjct 45922740 CCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGT 45922681 Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAG-ACGTT 10713 || || || || || || || || ||| | || | ||||||||||||||||| || || Sbjct 45922680 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTT 45922621 Query 10714 CTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCA 10773 ||| || || ||||| ||| | ||||| ||| ||||||| ||||||||| | || || Sbjct 45922620 CTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCA 45922561 Query 10774 ACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| || | ||||| || || ||||| || Sbjct 45922560 GCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 45922522 Score = 316 bits (350), Expect = 2e-81 Identities = 369/498 (74%), Gaps = 0/498 (0%) Strand=Plus/Minus Query 10306 TTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATAT 10365 ||| || | | | || ||| |||| || ||||||||||||||| | || || || ||||| Sbjct 13891762 TTTTCGATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 13891703 Query 10366 GATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGT 10425 |||||||||||| || || | || | || || |||| || ||||| || | || || Sbjct 13891702 GATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGT 13891643 Query 10426 AGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCAC 10485 ||||||||| || | ||||||| || ||||| || ||| |||||| | || Sbjct 13891642 AGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAAC 13891583 Query 10486 TCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGG 10545 ||||| ||||| || ||||| ||||| ||||||||||| || |||||||| || ||||| Sbjct 13891582 TCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGG 13891523 Query 10546 AATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGG 10605 |||||||| ||||||||| ||| | |||||||||||||| |||||||| || | || Sbjct 13891522 TGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGG 13891463 Query 10606 TCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTT 10665 | | |||| | ||||||| | |||| || ||||| || || ||||| || || || Sbjct 13891462 TTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTT 13891403 Query 10666 TGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAA 10725 || || || || ||| | || | |||||||||||||||||||| ||||| || || || Sbjct 13891402 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 13891343 Query 10726 TATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAG 10785 ||| ||| | ||||| ||| ||||||| ||||||||| | || || || || |||| Sbjct 13891342 TATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAA 13891283 Query 10786 CTTTGTTTTCCCAGAAGA 10803 || | ||||| || || Sbjct 13891282 TCTTATATTCCCTGAGGA 13891265 Score = 224 bits (248), Expect = 1e-53 Identities = 240/317 (76%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 10239 TTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCG 10298 |||| || || |||||||| ||||| || ||||||||||||| |||||||| ||||| | Sbjct 15262758 TTTTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAG 15262699 Query 10299 CGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCT 10358 | ||||| || || ||| | |||||| |||| || ||||||||||||||| | || || | Sbjct 15262698 CAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCAT 15262639 Query 10359 TCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAG 10418 | ||||||||||||||||| || || | || | ||| || |||| || || || || | Sbjct 15262638 TTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGG 15262579 Query 10419 TCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTG 10478 || || |||||||| || | | | ||||| || ||||| || ||| |||||| Sbjct 15262578 CAACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTA 15262519 Query 10479 ATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGA 10538 | ||||||| ||||| || ||||| ||||| || ||||| || || |||||||| | Sbjct 15262518 ACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAA 15262459 Query 10539 TATTTGGAATTGCTTTT 10555 | ||||| |||||||| Sbjct 15262458 TCTTTGGTGTTGCTTTT 15262442 >seq7 Length=31244610 Score = 289 bits (320), Expect = 3e-73 Identities = 358/490 (73%), Gaps = 0/490 (0%) Strand=Plus/Plus Query 8745 TATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGT 8804 |||| |||| |||||||| || || |||||||| ||||| || || |||||| | ||||| Sbjct 14634320 TATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGT 14634379 Query 8805 TGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTC 8864 |||||||| |||||||| || || || || ||||||||||| | || || ||| Sbjct 14634380 AGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAG 14634439 Query 8865 GCTGGTTCGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGA 8924 || | | || ||||| |||| ||| || || | || |||| || |||||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 8925 AGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATA 8984 || || ||||| || ||||| ||||||||||| || ||||| || || ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 8985 TGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGG 9044 ||| ||||||||| ||| | || || |||||| | ||||| |||||||| | || Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 9045 AATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTT 9104 || ||||| || || | || | || |||||||||||||| || || ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 9105 CAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAA 9164 |||||| || | | || | ||||| || || | || || ||||| || | | || Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 9165 CCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGA 9224 ||| || || ||||||||||| ||||||||| | || || ||||||||||| || || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 9225 CCTTGCGGCT 9234 ||| || ||| Sbjct 14634800 CCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 152 bits (168), Expect = 5e-32 Identities = 228/324 (70%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 8907 CTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGCCGCTCATGGCTACTTTGG 8966 ||||| || ||||||| || || ||||| || ||| | |||||||||| || ||||| Sbjct 3609647 CTACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGG 3609706 Query 8967 TCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGC 9026 || || |||||||||||||| ||||||||| ||| | || || |||||| | || Sbjct 3609707 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGC 3609766 Query 9027 TGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAA 9086 ||| |||||||| | || || ||||| || || | || | || ||| ||||||| Sbjct 3609767 TGCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAA 3609826 Query 9087 CCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTGCTCAACAC 9146 ||| || || ||||| || ||||| || | | || ||||| || || | || || Sbjct 3609827 CCTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATAC 3609886 Query 9147 CTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAAAGAAACGC 9206 |||||| || | | || || || || ||||||||||| ||||||||| || || Sbjct 3609887 CTGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGC 3609946 Query 9207 ACACAACTTCCCGCTTGACCTTGC 9230 |||| || | || ||||| || Sbjct 3609947 TCACAGTTTTTCTCTAGACCTAGC 3609970 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 10651 TCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGAC 10710 || ||| || || || || || || || ||| | || | |||||||||||||||||||| Sbjct 26735462 TCCTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGAC 26735521 Query 10711 GTTCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCA 10762 ||||| || || ||||| ||| | ||||| ||| |||||| ||||||||| Sbjct 26735522 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGTGTGGATGGCA 26735573 >seq9 Length=26294017 Score = 147 bits (162), Expect = 2e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 10259 GGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTT 10318 ||||| || |||||||||||||||||||||| ||||| || ||||| || || ||| | Sbjct 19895509 GGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATC 19895450 Query 10319 CTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCT 10378 |||||| |||| || ||||||||||||||| | || || || ||||||||||||||||| Sbjct 19895449 CTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 19895390 Query 10379 GGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACT 10437 || || | || | ||| || |||| || || || || | || || |||||||| || Sbjct 19895389 GGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCT 19895331 >seq2 Length=39559433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | || |||||| | | |||| || ||||||||||| || |||||||| Sbjct 8166110 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGC 8166051 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | |||||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 8166050 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 8165991 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGT 9967 || || |||||| || || ||| | || ||| Sbjct 8165990 GTAACTTCTTGGTATACCCATGGATTGGCGAGT 8165958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516479922528000