Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3 120 2e-21 seq5 109 4e-18 seq4 100 2e-15 seq12 95.1 8e-14 seq11 86.0 4e-11 >seq3 Length=38925377 Score = 120 bits (132), Expect = 2e-21 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706 |||||||| || | ||| ||||||| || |||||| | ||| ||| ||| || Sbjct 37123533 AAACAATTCTCTGCCGAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAAATTGCT 37123592 Query 474707 --AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTA 474764 |||| || || ||| | || | |||| || | |||||||| || || || | Sbjct 37123593 GAAGCT--TACCTAGGATCAACTGTGAAGAATGCTGTTGTCACTGTTCCTGCTTACTTCA 37123650 Query 474765 ATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTAC 474824 ||||||| || | || ||||| || ||||| || ||||| |||||||||||| | | Sbjct 37123651 ATGATTCCCAGAGGCAGGCAACCAAGGATGCCGGTGTTATTGCGGGTCTTAATGTTATGC 37123710 Query 474825 GTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || || ||||| |||||||| || ||| |||||||||||||||| ||||| Sbjct 37123711 GCATCATCAATGAGCCAACAGCTGCTGCAATTGCTTATGGTCTTGACAAGAA 37123762 Score = 91.5 bits (100), Expect = 1e-12 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 ||||| |||| ||||| | || || || || |||||| || || | | || Sbjct 649783 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 649724 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || |||||||||||||| ||||| ||||| |||| ||||| || || || ||||| || Sbjct 649723 GTGATTACTGTTCCAGCTTATTTCAATGACGCTCAGCGTCAGGCTACCAAGGATGCTGGT 649664 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | || || || ||| |||| | | || || |||||||| || || ||||| || || Sbjct 649663 CGCATCGCTGGGCTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCCGCTCTGTCT 649604 Query 474860 TATGG 474864 ||||| Sbjct 649603 TATGG 649599 >seq5 Length=31082981 Score = 109 bits (120), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || || ||||| ||||||||||| || || || | || || ||||| ||||| Sbjct 26219443 CGGAGGCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTG 26219384 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| || ||||| |||||||| || ||||| || || || ||||| ||||| Sbjct 26219383 CGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATTCCC 26219324 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| || || || ||||| ||||| ||||| | | | |||||| Sbjct 26219323 TCCTTGTCCTGGATTTTGGCCTTGACGTTATCAATGGTATCCGAGGACTCAACCTCAAGG 26219264 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||||||||| ||||| || || Sbjct 26219263 GTTATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTG 26219226 Score = 93.3 bits (102), Expect = 3e-13 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| |||||||| || || || ||||| | ||| || || || ||||| |||| Sbjct 9800925 ACGGAGACGGAGCACCAGGTGCAAAGTGGA--TTCCTTCTGAATGTTGTAATCTGCTAAG 9800982 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||| || || ||||| |||||||| || || || || ||||| || ||||| Sbjct 9800983 GTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATG 9801042 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727 ||||||||||| ||||||||| ||| || ||||| || || | | | || || Sbjct 9801043 CCTTCCTTGTCCTGAATCTTTGCTTTCACGTTGTCAATCGTGTCTGACGACTCAA-CCTC 9801101 Query 480728 AAGGGTAATAGTTTTACCGGT 480748 |||||||| ||||| ||||| Sbjct 9801102 CAGGGTAATGGTTTTGCCGGT 9801122 >seq4 Length=33711903 Score = 100 bits (110), Expect = 2e-15 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| ||||||||||| || | ||| || || || | |||||||| || ||| Sbjct 30264504 ACGAAGGCGGAGTACAAGGTGCAAGGTGGAC--TCCTTCTGGATGTTATAATCCGCAAGA 30264447 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||| ||||| ||||| ||||| || ||||| || || || || ||||| || Sbjct 30264446 GTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATG 30264387 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727 || |||||||| |||||||| || ||| ||||| ||||| | | | || | | Sbjct 30264386 CCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCC 30264327 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||| || || || || ||||| |||||||| || || || Sbjct 30264326 AA-GGTGATGGTCTTGCCAGTGAGGGTCTTAACAAATATCTG 30264286 >seq12 Length=27944835 Score = 95.1 bits (104), Expect = 8e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||| ||||| || ||||| || || | |||||| |||||||| Sbjct 7454149 GCAGTGGTTACTGTTCCGGCATACTTCAATGACTCACAGAGGACAGCAACAAAAGATGCT 7454208 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | |||||||| | | ||| | || ||||| ||||| || || || || | ||| Sbjct 7454209 GGGCGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCGACTGCTGCATCCCTT 7454268 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| ||||| Sbjct 7454269 GCTTATGGTTTTGAGAAGAA 7454288 >seq11 Length=28494620 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || ||||| || || | || || || || |||| Sbjct 28217868 ATGCTGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 28217927 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| || || | ||||| || ||||| || || || || || Sbjct 28217928 CTGGAGTGATTGCTGGTCTCAACGTCATGCGTATCATCAATGAGCCGACTGCCGCAGCTA 28217987 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 28217988 TTGCCTATGGTCTTGACAAGAA 28218009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178685261776