Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq1 567 9e-157 seq7 286 4e-72 seq9 145 1e-29 seq12 140 4e-28 seq2 100 4e-16 >seq1 Length=46096743 Score = 567 bits (628), Expect = 9e-157 Identities = 740/1016 (73%), Gaps = 7/1016 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || |||||||| || ||||| Sbjct 45922507 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 45922566 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGT- 101828 | ||||| ||| ||||| | ||| || || || || || || || |||||||| || Sbjct 45922567 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTA 45922626 Query 101829 CTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAG 101888 ||| || || ||||||| ||||| | ||| || ||||| || |||||||| ||||| || Sbjct 45922627 CTCAAATTCAGGATCTTTCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAG 45922686 Query 101889 GTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAA 101948 ||| ||||| || || | | || || | ||| |||| | ||| | || || ||||| Sbjct 45922687 GTTTAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTACAAA 45922746 Query 101949 GAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCA 102008 |||||||||||||| ||||| | ||||| ||| |||| |||||||||||| ||||| Sbjct 45922747 TAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCA 45922806 Query 102009 GAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTT 102068 || || || | || |||||||||||||| ||||| |||| || | | || || Sbjct 45922807 AAAGCGATTAACGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCGCG 45922866 Query 102069 GAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGAT 102128 ||| || ||||| |||||| || ||| | |||||||| |||||||| | || || || Sbjct 45922867 GAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACAGTTGCCCCATGAAT 45922926 Query 102129 TGCTGACAGCAGTGCTCCTCCCAGGATAC-CT-GCAACACCCATCATATGGAATGGGTTG 102186 || | ||||| || | || | |||| || ||||| ||||||||||| |||||||| Sbjct 45922927 AGCGCATAGCAGAGCCGCACCTA--ATACTCTGGCAACTCCCATCATATGAAATGGGTTC 45922984 Query 102187 AGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCA 102246 | |||||| ||||| || || || | |||||| | ||||| |||||||||||| || ||| Sbjct 45922985 AACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCA 45923044 Query 102247 AACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACA 102306 || |||| ||||||||||| ||| ||||| || ||||| || || || | ||| Sbjct 45923045 AAACTCGGCGAAAAGAACCAACCGGATTGTCCCAGTGGATAAATCAGGAATAAGGAAACA 45923104 Query 102307 AAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTA 102366 ||||||||||| || |||||||| | ||| ||||| || || || | | || ||| | Sbjct 45923105 AAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCAATTGAACAGACCGA 45923164 Query 102367 GCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACA 102426 || | || |||||||| | ||||||||| || || ||||| || || |||||||| ||| Sbjct 45923165 GCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCAACA 45923224 Query 102427 AAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCC 102486 |||| ||| || || || | ||| ||| | ||||| ||||| ||||| || ||| Sbjct 45923225 AAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGGCCC 45923284 Query 102487 CAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGG 102546 || ||||| | | ||| || | | | | ||||| || || || || || || | | Sbjct 45923285 CATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCCGCGGTTAAG 45923344 Query 102547 AAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 ||||| |||||| | || | ||| | || ||||||||||| ||||| |||| Sbjct 45923345 AAATTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACAAAA 45923404 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || || || |||| ||| || || | |||| ||||||| |||||||| | ||| ||| Sbjct 45923405 GTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAATAGGCCA 45923464 Query 102667 GACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 ||||| || | ||| ||||| || |||| | ||| |||||| |||| || ||||| Sbjct 45923465 GACCATCCTA-AAAAACAAAACGGTCTCTTCTAA-CCAGTCGTCCATAATATCAAA 45923518 Score = 327 bits (362), Expect = 1e-84 Identities = 385/521 (74%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 ||||||||||| | |||| || ||||| |||| || |||||||| || ||||| Sbjct 13891247 AGAGCGTTGCCACGTGGC------TCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 13891300 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||||| | ||| || || || || || || || |||||||| ||| Sbjct 13891301 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 13891360 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 13891361 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 13891420 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| || |||| | || || | ||| |||| | ||| | || || ||||| Sbjct 13891421 TTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAAT 13891480 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||||||||| ||||| | ||||| ||| |||| |||||||||||| ||||| Sbjct 13891481 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 13891540 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 13891541 AAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCGCGG 13891600 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| |||||||||||| | |||||||| || || || | || ||||| Sbjct 13891601 AAGGTATTTGCACCATCACCATCTTCGAATAGAGTGTTTTCTACGGTAGCCCCATGGATA 13891660 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| ||| | || | | || ||||| ||||||||||| |||||||| | | Sbjct 13891661 GCGCATAGCAGAGCTGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAAC 13891720 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAA 102230 ||||| ||||| || || || | ||| || | | ||| ||| Sbjct 13891721 GTCCAATTATGAAATCCTTGGAAGAAAAGGATGGATCGAAA 13891761 Score = 212 bits (234), Expect = 8e-50 Identities = 236/315 (75%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 101982 AAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTC 102041 ||| |||| |||||||||||| ||||| || || || || || |||||||||||||| || Sbjct 15262442 AAAAGCAACACCAAAGATTTGGGACCAAAAGCGATTAGCGGTGACCATTGAATAAGTTTC 15262501 Query 102042 TTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAG 102101 ||| |||| || | | || || ||| || ||||| ||||||||| ||| | || Sbjct 15262502 TTCAGCTTGAGTTGGGTTAAAAGCGCGGAAGGTATTTGCACCATCACCATCCTCAAATAG 15262561 Query 102102 AGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGC 102161 |||||| || || || | || || || || | ||||| || | || | | || || Sbjct 15262562 AGTGTTTTCAACGGTTGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGC 15262621 Query 102162 AACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAG 102221 ||| ||||||||||| |||||||| | |||||| ||||| || || || | |||||| | Sbjct 15262622 AACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGAT 15262681 Query 102222 GAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAG 102281 ||||| |||||||||||| || ||||| || ||||||||||||| ||| ||||| || Sbjct 15262682 GAATCGAAATATCGCTGCTACGCCAAAACTCGGTGCAAAGAACCAACCGGATTGTCCCAG 15262741 Query 102282 AGGATAGATGAGAAA 102296 ||||| || || || Sbjct 15262742 TGGATAAATCAGTAA 15262756 >seq7 Length=31244610 Score = 286 bits (316), Expect = 4e-72 Identities = 353/490 (72%), Gaps = 2/490 (0%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 14634809 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 14634750 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 | ||| ||||||| | || ||||| || || | || ||||| || | ||||| | Sbjct 14634749 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 14634690 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||||||||| |||||||| ||||| || |||| ||| | || || Sbjct 14634689 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 14634630 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 |||||| || || |||| || | |||||||| Sbjct 14634629 GAACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 14634570 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 || || ||||||||||| || || || || |||||||||||||| || || || || Sbjct 14634569 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 14634510 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 |||||||||||||| || || ||||||| | || ||||| ||||||| || || Sbjct 14634509 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTC 14634450 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | || || |||| ||||| |||||||||||||| || ||||| |||| Sbjct 14634449 CCTGATCAAACTAGAGGTTACCAAG-GAACCATGCATAGCACTGAATAGGGAACCGCCGA 14634391 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| || || | |||||| || || ||||| || ||||||||||| || |||| Sbjct 14634390 ATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCCTGGA 14634331 Query 103650 AGACCAGCAT 103659 | || | ||| Sbjct 14634330 ATACAATCAT 14634321 >seq9 Length=26294017 Score = 145 bits (160), Expect = 1e-29 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 102084 ATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGC 102143 |||||| || ||| | |||||||| ||||| || | || || || || | ||||| || Sbjct 19895315 ATCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAGAGC 19895374 Query 102144 TCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAA 102203 | || | | || ||||| ||||||||||| |||||||| | |||||| ||||| || Sbjct 19895375 CGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAA 19895434 Query 102204 GCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAA 102263 || || | |||||| | ||||| |||||||||||| || ||||| ||||||||||| Sbjct 19895435 TCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAA 19895494 Query 102264 CCAACTGGACTGTCC 102278 ||||| ||| ||||| Sbjct 19895495 CCAACCGGATTGTCC 19895509 >seq12 Length=27944835 Score = 140 bits (154), Expect = 4e-28 Identities = 213/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 103173 CAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAGAC 103232 |||| ||||| || | || ||||||| ||| | |||||||| ||||||||||| ||| Sbjct 3609972 CAGCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGAT 3609913 Query 103233 CAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGG 103292 ||| || |||| | || |||||||| || | || ||||| || ||||| | | Sbjct 3609912 TAGCACGATTGATGATATCAGCCCAGGTATTAACAACGCGACCTTGGTTATCAACTACAG 3609853 Query 103293 ACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGTGA 103352 | ||||| || ||||||||||| |||||||| | ||| || |||| ||| | || |||| Sbjct 3609852 ATTGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTGA 3609793 Query 103353 ACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTTGA 103412 |||| || || |||| || | |||||||| | Sbjct 3609792 ACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAA 3609733 Query 103413 ATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATG 103472 | || ||||||||||| || || || || ||||||||||||| | || || || | Sbjct 3609732 AACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTATAAG 3609673 Query 103473 TCTCTTCCTCTTG 103485 ||||||||||||| Sbjct 3609672 TCTCTTCCTCTTG 3609660 >seq2 Length=39559433 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 102580 CCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGA 102639 || ||||||||||| ||||| |||| || || || |||| ||| || || | |||| | Sbjct 8165968 CCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAA 8166027 Query 102640 TAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTA 102699 |||||| |||||||| | ||| |||||||| || ||||| ||||| || |||| | Sbjct 8166028 TAAGCACAAGGAAAAAGCAATAGGCCAGACCATCCTACAAAAACAAAACGGTCTCTTCGT 8166087 Query 102700 ATCCAGTCATCCAGGATGTCAAA 102722 | |||||| |||| || ||||| Sbjct 8166088 AACCAGTCGTCCATAATATCAAA 8166110 Score = 100 bits (110), Expect = 4e-16 Identities = 179/260 (69%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 102463 AAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCA 102522 ||||| ||||| ||||| || ||||| ||||| | | ||| || | | | | ||| Sbjct 19905778 AAATCCCCTTGTGCTTCTGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCA 19905719 Query 102523 GGCGTTGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCG 102582 || || || || || || || | |||||| |||||| | || | ||| | || Sbjct 19905718 GGGGTGGAAACTGCTGCGGTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCCAATCCA 19905659 Query 102583 TGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAA 102642 ||||||||||| ||||| |||| || || || |||| ||| || || | |||| |||| Sbjct 19905658 TGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAA 19905599 Query 102643 GCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATC 102702 ||| |||||||| | | | ||| || | | ||| ||||| | || | | | | | Sbjct 19905598 GCACAAGGAAAAAGCAAAACGCTAGATCATCATA-AAAAACAAAATGGTCCCTTCTTAAC 19905540 Query 102703 CAGTCATCCAGGATGTCAAA 102722 |||||||||| |||||||| Sbjct 19905539 CAGTCATCCATAATGTCAAA 19905520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633513504972960