Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2 116 2e-21 >seq2 Length=39559433 Score = 116 bits (128), Expect = 2e-21 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | |||||| ||||||||||| || Sbjct 38035733 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACATGCAGTATCATTGAAAACACGCA 38035674 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | ||| | || ||| ||||| | |||| | || || | || Sbjct 38035673 GCATGGGAACAATCCCATTAGATGTTCCATTTGTCCCTCGAATGTAACTCCCAGTAGCTC 38035614 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 |||||| |||| ||| | ||| | ||||||||| ||||| || | ||||| ||| Sbjct 38035613 TAATATTGTGA-ATTGAGACACCAACTCCACCAGCACATTTGCTTATGGTAGCACATTCT 38035555 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | || |||||| ||||||| Sbjct 38035554 GAGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 38035514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039962992900