Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1 354 9e-93 seq7 237 2e-57 seq12 114 1e-20 seq2 105 8e-18 >seq1 Length=46096743 Score = 354 bits (392), Expect = 9e-93 Identities = 706/1044 (68%), Gaps = 34/1044 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 45922503 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 45922562 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 45922563 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 45922622 Query 122986 AGT-CTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTC 123044 ||| ||| || || || |||| ||||| | || || || || || ||||| || || | Sbjct 45922623 AGTACTCAAATTCAGGATCTTTCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 45922682 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 ||||| || || || || || | || |||| |||| | ||| |||| || | Sbjct 45922683 GTAGGTTTAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTA 45922742 Query 123105 CGAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTG 123164 | || | ||||| ||| ||||| | | ||| || ||||| || | |||||| || || | Sbjct 45922743 CAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGG 45922802 Query 123165 ACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATG 123224 |||| || | || | || | ||| |||||||||||| | || || || | || | Sbjct 45922803 ACCAAAAGCGATTAACGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 45922862 Query 123225 CTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATG 123284 | | ||| || | | ||| ||| ||| ||| | | | Sbjct 45922863 CGCGGAAGGTATTTGC---------ACCATCACC------------GTCCTCAAATAGAG 45922901 Query 123285 TGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAA 123344 |||| | ||| ||||| |||||||| || ||||| | || |||||| || || |||| Sbjct 45922902 TGTTTTCCACAGTTGCCCCATGAATAGCGCATAGCAGAGCCGCACCTAATACTCTGGCAA 45922961 Query 123345 CACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATAT 123404 | |||||||| |||||||| ||||| || || || || ||||| | ||| | ||| Sbjct 45922962 CTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGA 45923021 Query 123405 AACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTG 123464 | ||||| || ||||| || || || || | |||||||||| | || || |||| Sbjct 45923022 ATCGAAATATCGCTGCTACGCCAAAACTCGGCGAAAAGAACCAACCGGATTGTCCCAGTG 45923081 Query 123465 GATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGT 123524 |||| ||||| || | | | || || ||||| ||||||||| | ||| || | Sbjct 45923082 GATAAATCAGGAATAAGGAAACAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTAT 45923141 Query 123525 AAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 |||| | | ||| | || | |||||||| | | |||||||||||| ||| Sbjct 45923142 AAGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTG 45923201 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 |||| | ||||| | || ||||| |||| ||||| || | ||| |||||||| | Sbjct 45923202 CAAAAGCCCCATGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAA 45923261 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG---ACCCATTGCGTC 123699 | ||||||||||| || ||||| || | || | || | || | | |||| Sbjct 45923262 AATCCCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGG--- 45923318 Query 123700 ACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAAT 123759 |||| ||||| ||||| || |||||||| || || || | ||| ||| || | Sbjct 45923319 --CAGGGGTGGAAACTGCCGCGGTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCCAA 45923376 Query 123760 ACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAG 123819 ||||| |||||||| || || || || || || ||| |||||||| || | | | Sbjct 45923377 TCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAA 45923436 Query 123820 ATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTT 123879 ||| |||||||| | ||| || || ||||||||||||| || |||||||| ||||| | Sbjct 45923437 ATAAGCACAAGGAAAAAGCAATAGGCCAGACCATCCTA-AAAAACAAAACGGTCTCT-TC 45923494 Query 123880 TAACCAGTCGTCAAGAACATCAAA 123903 |||||||||||| | || |||||| Sbjct 45923495 TAACCAGTCGTCCATAATATCAAA 45923518 Score = 176 bits (194), Expect = 5e-39 Identities = 366/546 (67%), Gaps = 27/546 (5%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||| || || ||||||| || ||| ||||| || || Sbjct 13891243 TTAAAGAGCGTTGCCACGTGGC------TCCTCAGGGAATATAAGATTTTCATGAGGCTG 13891296 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 13891297 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 13891356 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 13891357 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 13891416 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || || || || | || |||| |||| | ||| |||| || || Sbjct 13891417 TAGGTTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTAC 13891476 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| ||||| | | ||| || ||||| || | |||||| || || || Sbjct 13891477 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 13891536 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 13891537 CCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 13891596 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | | ||| ||| || || || ||| | ||| Sbjct 13891597 GCGGAAGGT---------ATTTGCACCATCACCATCTT-CGA---------ATAGAGTGT 13891637 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 |||| || || || ||||| || || ||||| | ||| | |||| || ||| ||||| Sbjct 13891638 TTTCT--ACGGTAGCCCCATGGATAGCGCATAGCAGAGCTGCGCCTAATACTCCGGCAAC 13891695 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| ||||| || || || || ||||| | ||| | ||| | Sbjct 13891696 TCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGGA 13891755 Query 123406 ACGAAA 123411 ||||| Sbjct 13891756 TCGAAA 13891761 >seq7 Length=31244610 Score = 237 bits (262), Expect = 2e-57 Identities = 347/488 (71%), Gaps = 2/488 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 14634805 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 14634746 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGC-ATCAACAACTGA 124167 || | ||| | | |||| |||| || | | || || || |||||| || || Sbjct 14634745 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTACAGA 14634687 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 |||||| || ||||| || || | |||||| ||||| || | ||||| | || || || Sbjct 14634686 TTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 14634627 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 124287 ||| | | | | ||||| || | || | ||||||||| | | | |||||||| || Sbjct 14634626 CCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 14634567 Query 124288 TGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGT 124347 |||||| |||||||| | || ||||| ||||| || || || || || || || || Sbjct 14634566 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 14634507 Query 124348 TTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCT 124407 ||||| ||||| || || | ||||| | || || || | || || ||||| || Sbjct 14634506 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTCCCT 14634447 Query 124408 GATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACAT 124467 ||| | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 14634446 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 14634387 Query 124468 TCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || ||||| ||| |||||| || |||||||| || |||||||| ||||| ||||| || Sbjct 14634386 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCCTGGAATAC 14634327 Query 124528 GAACATAA 124535 | ||||| Sbjct 14634326 AATCATAA 14634319 >seq12 Length=27944835 Score = 114 bits (126), Expect = 1e-20 Identities = 212/311 (68%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| | || |||| ||||| ||| ||||| ||||||||||| | || Sbjct 3609970 GCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGATTA 3609911 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | || | | |||| |||| || || | || | |||||| || ||| Sbjct 3609910 GCACGATTGATGATATCAGCCCAGGTATTAACAACGCGACCTTGGTTATCAACTACAGAT 3609851 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||| || || | |||||| | ||| || | ||||| | || || ||| Sbjct 3609850 TGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTGAAC 3609791 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | | | | ||||| || | || | ||||||||| | | | |||||||| || Sbjct 3609790 CAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 3609731 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| ||||| || || | | || || || || Sbjct 3609730 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTATAAGTC 3609671 Query 124349 TCTTCTTCTTG 124359 ||||| ||||| Sbjct 3609670 TCTTCCTCTTG 3609660 >seq2 Length=39559433 Score = 105 bits (116), Expect = 8e-18 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 123756 CAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTG 123815 |||| ||||| |||||||| || || || || || || ||| |||||||| || | | Sbjct 8165964 CAAT-CCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAG 8166022 Query 123816 ATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTC 123875 | ||| |||||||| | ||| || || ||||||||||||| || |||||||| |||| Sbjct 8166023 CGAAATAAGCACAAGGAAAAAGCAATAGGCCAGACCATCCTACAAAAACAAAACGGTCTC 8166082 Query 123876 TCTTTAACCAGTCGTCAAGAACATCAAA 123903 | |||||||||||| | || |||||| Sbjct 8166083 TTCGTAACCAGTCGTCCATAATATCAAA 8166110 Score = 98.7 bits (108), Expect = 1e-15 Identities = 179/259 (69%), Gaps = 11/259 (4%) Strand=Plus/Minus Query 123650 CCTTGTGCTTCAGGTCCCCAAAGGAACA--TGAGACTATG---ACCCATTGCGTCACCAG 123704 ||||||||||| || ||||| || | || ||| | || | | |||| ||| Sbjct 19905772 CCTTGTGCTTCTGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTG-----GCAG 19905718 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 | ||||| |||||||| |||||||| || || || | ||| ||| || | |||| Sbjct 19905717 GGGTGGAAACTGCTGCGGTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCCAATCCAT 19905658 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 | |||||||| || || || || || || ||| |||||||| || | | | ||| | Sbjct 19905657 GGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAG 19905598 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 ||||||| | ||| |||| | ||| |||| || || |||||| | || || |||||| Sbjct 19905597 CACAAGGAAAAAGCAAAACGCTAGATCATCATA-AAAAACAAAATGGTCCCTTCTTAACC 19905539 Query 123885 AGTCGTCAAGAACATCAAA 123903 |||| || | || ||||| Sbjct 19905538 AGTCATCCATAATGTCAAA 19905520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998313150240