Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1 506 3e-138 seq7 297 3e-75 seq12 167 3e-36 seq9 138 2e-27 seq2 109 7e-19 >seq1 Length=46096743 Score = 506 bits (560), Expect = 3e-138 Identities = 733/1024 (72%), Gaps = 13/1024 (1%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| || | |||||| | || | || ||||| || | Sbjct 45922502 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGA---TTTTCATGAG 45922558 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || |||||| |||| | || | ||| || | ||||||||| |||| Sbjct 45922559 GCTGATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGT 45922618 Query 23503 AGAAGGT-CTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAA 23561 |||| || |||| | | ||||| || ||||| || || || || || ||||| Sbjct 45922619 AGAAAGTACTCAAATTCAGGATCTTTCGCTGCACGGATTTCCTGGGAAACGAAGTCATAG 45922678 Query 23562 GCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACA 23621 ||||| || || ||||| || || | | |||||||| | | ||| | ||| |||| Sbjct 45922679 GCACGTAGGTTTAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACC 45922738 Query 23622 GGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATT 23681 || ||||| | ||||||||| || |||||||| |||||| ||| ||||| || |||||| Sbjct 45922739 GGTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATT 45922798 Query 23682 TGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCG 23741 || |||||||| ||||| | || ||||| ||||| || || || | ||||| | | Sbjct 45922799 TGGGACCAAAAGCGATTAACGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTA 45922858 Query 23742 AACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACT 23801 || || || || ||||| || || || ||| | || || || || ||||| | Sbjct 45922859 AAAGCGCGGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACAGTTGCC 45922918 Query 23802 CCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAG 23861 ||||||||||| | || || || | || | || | ||||||||||||||||| || Sbjct 45922919 CCATGAATAGCGCATAGCAGAGCCGCACCTAATACTCTGGCAACTCCCATCATATGAAAT 45922978 Query 23862 GGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCA 23921 ||||| | |||||| |||||||| || |||| |||||| | ||| | || ||||| || Sbjct 45922979 GGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCT 45923038 Query 23922 ACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACA 23981 || || |||||||||| |||||||||| || ||||||| ||||| || ||||||| Sbjct 45923039 ACGCCAAAACTCGGCGAAAAGAACCAACCGGATTGTCCCAGTGGATAAATCAGGAATAAG 45923098 Query 23982 GACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATT 24041 || || || ||||| || || ||||| || | ||| ||||| || || || | | || Sbjct 45923099 GAAACAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCAATTGAA-C 45923157 Query 24042 AGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAG 24100 ||| || || |||||||| ||||||||||| |||||||| |||||||| || || ||||| Sbjct 45923158 AGACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAG 45923217 Query 24101 AGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTC 24160 ||||||||| | ||| || || || | ||| ||| || ||| |||||||| | || Sbjct 45923218 AGCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTC 45923277 Query 24161 AGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGC 24220 || ||||| ||||| | | ||| || | | | | ||||| || || || || || Sbjct 45923278 CGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCCGC 45923337 Query 24221 CG-TAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCG 24279 | ||||||| || ||| || | ||||||||| || | ||||||||| |||||| | Sbjct 45923338 GGTTAAGAAA-TTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAG 45923396 Query 24280 TAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTA 24339 | ||||||| ||| || |||| |||||| || | || | ||||||| |||| ||| | Sbjct 45923397 TTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCA 45923456 Query 24340 GGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGT 24399 || |||||||| || | ||| ||||| || || | | ||| ||||||||||| || | Sbjct 45923457 ATAGGCCAGACCATCCTA-AAAAACAAAACGGTCTCTTCTAA-CCAGTCGTCCATAATAT 45923514 Query 24400 CAAA 24403 |||| Sbjct 45923515 CAAA 45923518 Score = 253 bits (280), Expect = 3e-62 Identities = 333/458 (73%), Gaps = 5/458 (1%) Strand=Plus/Plus Query 23459 CATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGAAGGTCTCATACGA 23518 |||||| |||| | || | ||| || | ||||||||| |||||||| |||||| | Sbjct 13891309 CATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTCTCAAATTC 13891368 Query 23519 ACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCACGAAGATTAAGAGC 23578 | |||||| || ||||| || || || || || ||||| ||||| || || ||||| Sbjct 13891369 AGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGGTTCAGAGC 13891428 Query 23579 AAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAACAAACAACATAAA 23638 || |||| | |||||||| | | ||| | ||| |||| || ||||| | |||||| Sbjct 13891429 CAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAATAGCATAAA 13891488 Query 23639 GAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTGACCAAAAACGATT 23698 ||| || |||||||| |||||| ||| ||||| || |||||||| |||||||| || || Sbjct 13891489 GAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAAAAGCGGTT 13891548 Query 23699 TGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTT 23758 || || ||||| ||||| || || || | ||||| | | || || || || || Sbjct 13891549 AGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCGCGGAAGGTATT 13891608 Query 23759 TGCCTGTTCTCCATCTTC--ATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAG 23816 ||| || |||||||| ||| ||||| |||| || ||| | ||||| ||||| | Sbjct 13891609 TGCACCATCACCATCTTCGAATAGAGTGTTTTCT--ACGGTAGCCCCATGGATAGCGCAT 13891666 Query 23817 AGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAG 23876 || || ||| | || | || || ||||||||||||||||| || ||||| | |||||| Sbjct 13891667 AGCAGAGCTGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAA 13891726 Query 23877 TTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAAT 23914 |||||||| || |||| ||| || | | | | |||||| Sbjct 13891727 TTATGAAATCCTTGGAAGAAAAGGATGGATC-GAAAAT 13891763 Score = 190 bits (210), Expect = 3e-43 Identities = 231/315 (73%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 23663 AAACGCAACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTC 23722 ||| ||||| || |||||||| |||||||| ||||| || || ||||| ||||| || || Sbjct 15262442 AAAAGCAACACCAAAGATTTGGGACCAAAAGCGATTAGCGGTGACCATTGAATAAGTTTC 15262501 Query 23723 CTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAG 23782 || | ||||| | | || || || || ||||| || ||||| ||| | || Sbjct 15262502 TTCAGCTTGAGTTGGGTTAAAAGCGCGGAAGGTATTTGCACCATCACCATCCTCAAATAG 15262561 Query 23783 TGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGC 23842 || || || || || | ||||||||||| | || || || | || | || || || Sbjct 15262562 AGTGTTTTCAACGGTTGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGC 15262621 Query 23843 AACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAG 23902 ||||||||||||||| || ||||| | |||||| |||||||| || |||| |||||| | Sbjct 15262622 AACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGAT 15262681 Query 23903 GAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAA 23962 ||| | || ||||| || || || |||||||| |||||||||||| || ||||||| Sbjct 15262682 GAATCGAAATATCGCTGCTACGCCAAAACTCGGTGCAAAGAACCAACCGGATTGTCCCAG 15262741 Query 23963 AGGATAGATGAGGAA 23977 ||||| || || || Sbjct 15262742 TGGATAAATCAGTAA 15262756 >seq7 Length=31244610 Score = 297 bits (328), Expect = 3e-75 Identities = 359/489 (73%), Gaps = 0/489 (0%) Strand=Plus/Minus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || || || || || | |||||| || || || | ||||| Sbjct 14634809 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 14634750 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 | ||||||||||| | || |||||||| || | || ||||| || ||||| || Sbjct 14634749 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 14634690 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| ||||| ||||| || ||||||||||| || | ||| | || || Sbjct 14634689 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 14634630 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 |||||| || || | || ||||| ||||| | ||||||||| || ||||| |||||||| Sbjct 14634629 GAACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 14634570 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 || ||||||||||||||| || || || || || ||||| || || || || || || Sbjct 14634569 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 14634510 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 |||||||| |||||||| || | ||||| | || || || ||||||| || || Sbjct 14634509 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTC 14634450 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | || | ||| || |||| || ||||||||| ||| || || || ||||| Sbjct 14634449 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 14634390 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| ||||| | |||||| || || ||||||||||| || |||||||||||||| Sbjct 14634389 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCCTGGAA 14634330 Query 27210 TACAAGCAT 27218 ||||| ||| Sbjct 14634329 TACAATCAT 14634321 >seq12 Length=27944835 Score = 167 bits (184), Expect = 3e-36 Identities = 226/315 (72%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 26732 CAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGAC 26791 |||| || || | | |||| | || || || |||||| || || || | |||||| Sbjct 3609972 CAGCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGAT 3609913 Query 26792 CAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAG 26851 |||||| |||| | || ||||| || || | || ||||| || ||||| |||| Sbjct 3609912 TAGCACGATTGATGATATCAGCCCAGGTATTAACAACGCGACCTTGGTTATCAACTACAG 3609853 Query 26852 ACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGA 26911 | || || || ||||| ||||| || ||||||| ||| || | ||| | || |||| Sbjct 3609852 ATTGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTGA 3609793 Query 26912 ACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGA 26971 |||| || || | || ||||| ||||| | ||||||||| || ||||| |||||||| | Sbjct 3609792 ACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAA 3609733 Query 26972 ATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGG 27031 | ||||||||||||||| || || || || || ||||| || | | || || || | Sbjct 3609732 AACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTATAAG 3609673 Query 27032 TCTCTTCTTCTTGAC 27046 ||||||| ||||||| Sbjct 3609672 TCTCTTCCTCTTGAC 3609658 >seq9 Length=26294017 Score = 138 bits (152), Expect = 2e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 23766 TCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCT 23825 || || || ||| | || || || || || || | ||||||||||| | || || || Sbjct 19895316 TCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAGAGCC 19895375 Query 23826 CCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAG 23885 | || | || || ||||||||||||||||| || ||||| | |||||| |||||||| Sbjct 19895376 GCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 19895435 Query 23886 CCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAAC 23945 || |||| |||||| | ||| | || ||||| || || || |||||||||||||||||| Sbjct 19895436 CCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAAC 19895495 Query 23946 CAAGATGACTGTCCCA 23961 ||| || ||||||| Sbjct 19895496 CAACCGGATTGTCCCA 19895511 >seq2 Length=39559433 Score = 109 bits (120), Expect = 7e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 24236 ACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCC 24295 ||| || | ||||||||| || | ||||||||| |||||| || ||||||| ||| || Sbjct 8165943 ACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCC 8166002 Query 24296 AGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACC 24355 |||| |||||| || | || | ||||||| |||| ||| | || |||||||| || Sbjct 8166003 TGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAATAGGCCAGACCATCC 8166062 Query 24356 CACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 ||||| ||||| || || | | | ||||||||||| || ||||| Sbjct 8166063 TACAAAAACAAAACGGTCTCTTCGTAACCAGTCGTCCATAATATCAAA 8166110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494300175840