Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 136 5e-27 seq2 82.4 9e-11 >seq6 Length=34615992 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 933722 CTTCGCCGAGCGCCTCGTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCATT 933781 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||||||||| |||||||| ||||| |||||| || || Sbjct 933782 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGACTCATGCCGGGCCTCACCTTCTCCAACGA 933841 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || |||||||||||| Sbjct 933842 GCTCATCTCCCGCGACGAGGGTCTCCAC 933869 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 8273145 CTTCGCCGAGCGCCTCGTCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCGGGTTCCTT 8273086 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | |||| | ||||||||||| |||||||| ||||| |||||| || || Sbjct 8273085 CTGCGCCATCTTTTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 8273026 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 8273025 GCTCATCTCCCGCGACGAGGGCCTGCAC 8272998 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| || || |||||| | ||||| ||||| || | | || Sbjct 31291840 TTTGTGGAGATGTTTGTGGGAGTTGGTGCCTCCCGTGTTCGTGATCTTTTCAAGAAGGCA 31291781 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 31291780 AAGGAGAATGCCCCTTGCATAGTATTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGG 31291721 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || |||||||| | ||||| |||| || Sbjct 31291720 GGGACAGGTATTGGTGGTGGAAATGATGAAAGGGAACAAACTTTGAATCAGTTACTGACT 31291661 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| ||||| || | | Sbjct 31291660 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGGGCT 31291601 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||||||| ||| ||| | || | || || |||||||| Sbjct 31291600 GATATCCTGGATTCCGCTTTACTCAGACCTGGACGTTTTGA 31291560 Score = 109 bits (120), Expect = 7e-19 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| || ||| || || || ||||| || Sbjct 34193063 GGGGCCAAGATCCCCAAGGGATGCCTGCTCGTCGGCCCGCCCGGAACCGGCAAGACACTG 34193004 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| ||||||| || | || || ||| || ||| | ||| | | Sbjct 34193003 CTGGCGCGTGCCGTCGCGGGGGAGGCCGGAGTGCCCTTCTTCTCCTGCGCCGCCTCCGAG 34192944 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || ||||| || ||| ||||| | || || || || | ||| Sbjct 34192943 TTCGTCGAGCTGTTCGTCGGTGTCGGCGCCTCCAGGGTCAGAGACCTGTTCGAGAAGGCC 34192884 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || ||||||||||||||||||||||| || || | ||| || Sbjct 34192883 AAGGCCAAGGCCCCTTGCATCGTCTTCATTGATGAGATTGATGCCGTCGGGAGGCAGCGT 34192824 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 ||||||| | | | | | |||||| ||||| || || || || || || || | | Sbjct 34192823 GGCGCTGGGCTCGGAGG--GGGAAATGATGAGAGGGAGCAGACCATCAACCAGCTCTTGA 34192766 Query 175574 CCGAGATGGATGGCTTTG 175591 | ||||||||||| |||| Sbjct 34192765 CGGAGATGGATGGATTTG 34192748 Score = 109 bits (120), Expect = 7e-19 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| || ||| || || || ||||| || Sbjct 34199381 GGGGCCAAGATCCCCAAGGGATGCCTGCTCGTCGGCCCGCCCGGAACCGGCAAGACACTG 34199322 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| ||||||| || | || || ||| || ||| | ||| | | Sbjct 34199321 CTGGCGCGTGCCGTCGCGGGGGAGGCCGGAGTGCCCTTCTTCTCCTGCGCCGCCTCCGAG 34199262 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || ||||| || ||| ||||| | || || || || | ||| Sbjct 34199261 TTCGTCGAGCTGTTCGTCGGTGTCGGCGCCTCCAGGGTCAGAGACCTGTTCGAGAAGGCC 34199202 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || ||||||||||||||||||||||| || || | ||| || Sbjct 34199201 AAGGCCAAGGCCCCTTGCATCGTCTTCATTGATGAGATTGATGCCGTCGGGAGGCAGCGT 34199142 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 ||||||| | | | | | |||||| ||||| || || || || || || || | | Sbjct 34199141 GGCGCTGGGCTCGGAGG--GGGAAATGATGAGAGGGAGCAGACCATCAACCAGCTCTTGA 34199084 Query 175574 CCGAGATGGATGGCTTTG 175591 | ||||||||||| |||| Sbjct 34199083 CGGAGATGGATGGATTTG 34199066 >seq2 Length=39559433 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCT-TCAACGGCTCGATGGCATCCTCA 75203 ||||||||| | || |||||||||| || || |||| | || | | | ||| | | Sbjct 38035203 TACTTTGGTTTTAAGACCCTTGAGA-GATCTTATCTGTTAAAAGTTGG-TGGAAAGGTTG 38035260 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 |||||| |||||| | ||| | ||| | || | || || || ||| ||| || |||| Sbjct 38035261 TGGAAAGACCACAGCATATGCTAATGAGAGTTTCTATTGGGATACACAAGGATGATATTG 38035320 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 | |||| | | |||||| ||| |||||| || | ||| | ||| || | |||| Sbjct 38035321 AATCTGCTATCAAAACATACCACATGATGTCTCAGCGCTGGTTTACTCATGCTTCGCCAA 38035380 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 |||| ||||||||||| || ||||| || || Sbjct 38035381 CCCTTTTCAATGCTGGCACTCCAAGGCCTCA 38035411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569510514560