Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq7 316 3e-81 seq12 158 1e-33 >seq7 Length=31244610 Score = 316 bits (350), Expect = 3e-81 Identities = 361/485 (74%), Gaps = 0/485 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 14634805 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 14634746 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | |||||| || ||| Sbjct 14634745 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 14634686 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || |||||||| ||||| || ||||| || | |||||| | || ||| ||| Sbjct 14634685 TGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 14634626 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 |||| | | | || || | | ||| | ||||||||| | | | | ||||||||| Sbjct 14634625 CAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 14634566 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 ||||| ||||||||||||| ||||| || |||||||| || ||||||||||| ||| Sbjct 14634565 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 14634506 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250 ||||| ||||||||||| | ||||| | || || || | |||||| || || ||| Sbjct 14634505 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTCCCTG 14634446 Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310 || | | ||| || || || ||||| |||||||||||||| || || || ||||| | | Sbjct 14634445 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 14634386 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || ||||| ||| ||| || || ||||||||||| |||||||| ||||| |||||||| Sbjct 14634385 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCCTGGAATACA 14634326 Query 8371 AACAT 8375 | ||| Sbjct 14634325 ATCAT 14634321 >seq12 Length=27944835 Score = 158 bits (174), Expect = 1e-33 Identities = 225/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| | || |||| ||||| ||| ||||| ||||||||||| | || Sbjct 3609970 GCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGATTA 3609911 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | || | | ||| |||| ||| || | ||| | |||||| || ||| Sbjct 3609910 GCACGATTGATGATATCAGCCCAGGTATTAACAACGCGACCTTGGTTATCAACTACAGAT 3609851 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || |||||||| ||||| || | ||| || | |||||| | || ||| ||| Sbjct 3609850 TGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTGAAC 3609791 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 |||| | | | || || | | ||| | ||||||||| | | | | ||||||||| Sbjct 3609790 CAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 3609731 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 ||||| ||||||||||||| ||||| || |||||||| | | ||||||||| ||| Sbjct 3609730 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTATAAGTC 3609671 Query 8191 TCTTCTTCTTGACCAAA 8207 ||||| ||||||| ||| Sbjct 3609670 TCTTCCTCTTGACAAAA 3609654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615862307620640