Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq7 316 6e-82 seq12 190 6e-44 >seq7 Length=31244610 Score = 316 bits (350), Expect = 6e-82 Identities = 361/485 (74%), Gaps = 0/485 (0%) Strand=Plus/Plus Query 42787 ATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTT 42846 ||| | || |||||||| ||||||||||| ||||||||||| || || ||| | ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 42847 GCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCT 42906 || || ||||| || || || | ||| |||||||||||| | || |||||| | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 42907 CTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAG 42966 | | | ||||| |||||||||||| | ||| | || |||| || ||||||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 42967 GAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATAT 43026 || ||||||||||| ||||| || || |||||||| ||||| || | |||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 43027 GCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGG 43086 || ||||| || ||| ||||| |||||||| | || |||||||| || | ||| Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 43087 ATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTT 43146 |||||||||||| || | || | ||||||||||| || ||| | || || || || || Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 43147 AACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAAT 43206 |||||||| | ||||||| || || || || ||||||||||||||| | || Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 43207 CGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGAT 43266 ||||| || ||||| | || || |||||||| || ||||| || |||||||| || || Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 43267 CTTGC 43271 || || Sbjct 14634801 CTAGC 14634805 >seq12 Length=27944835 Score = 190 bits (210), Expect = 6e-44 Identities = 224/303 (74%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 42948 CTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGG 43007 ||||| || |||||||||| ||||||||||| ||| | | || |||||||| ||||| Sbjct 3609647 CTACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGG 3609706 Query 43008 ACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGC 43067 || | |||||||||||||| ||||| || ||| ||||| |||||||| | || Sbjct 3609707 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGC 3609766 Query 43068 CGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAA 43127 |||||||| || | ||||||||||||||| || | || | ||||||||| | || || Sbjct 3609767 TGCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAA 3609826 Query 43128 CTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTAC 43187 | | || || || || || |||||||| | |||||||| || || || | ||| Sbjct 3609827 CCTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATAC 3609886 Query 43188 TTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGC 43247 ||||||||||| | |||||||| || ||||| | || || |||||||| | ||||| Sbjct 3609887 CTGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGC 3609946 Query 43248 ACA 43250 || Sbjct 3609947 TCA 3609949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532779546576