Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq7 324 2e-83 seq12 163 3e-35 >seq7 Length=31244610 Score = 324 bits (358), Expect = 2e-83 Identities = 368/491 (75%), Gaps = 2/491 (0%) Strand=Plus/Plus Query 155466 TATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGT 155525 |||| | || ||||| |||||||| || ||||||||||| || || |||||| | || || Sbjct 14634320 TATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGT 14634379 Query 155526 AGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTC 155585 ||| ||||| ||||| || || || ||| ||||||||| ||||| ||||| || ||| Sbjct 14634380 AGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAG 14634439 Query 155586 ACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGA 155645 | ||| | ||||| ||||| | || || || | ||||||| || || ||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 155646 AGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTA 155705 ||||| |||||||| ||||| || |||||||| || || || || | |||||||| || Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 155706 TGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTG 155765 ||| || |||||||| | | | ||||||||| | ||||| |||||||| | | Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 155766 CATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTT 155825 || ||| |||||| | ||| | || ||||| |||||||| ||||| ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 155826 CAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTA 155884 |||||| |||||||| || || | ||| || || ||| ||||| || || | | Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTAATACTTGGGCTGATATCATCA 14634738 Query 155885 ACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTG 155944 |||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||| | Sbjct 14634739 ACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAG 14634798 Query 155945 ACCTTGCTGCT 155955 |||| |||||| Sbjct 14634799 ACCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 163 bits (180), Expect = 3e-35 Identities = 224/313 (72%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 155641 CAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTC 155700 ||||| ||||| |||||||| ||| | | |||||||| || || || || | |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 155701 CAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTG 155760 || ||||| || |||||||| | | | ||||||||| | ||||| |||||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 155761 GTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTC 155820 | | || ||| |||||| | ||| | || ||| | |||||||| ||||| ||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 155821 AACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATT 155880 || || ||||| |||||||| || ||| || | ||| ||||| || || Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 155881 CTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCT 155940 | || || ||| |||||||||||||||||||||||| | ||| ||||||| || || Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTTCT 3609959 Query 155941 CTTGACCTTGCTG 155953 || ||||| |||| Sbjct 3609960 CTAGACCTAGCTG 3609972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584835112274720