Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq7 242 1e-59 seq12 140 9e-29 >seq7 Length=31244610 Score = 242 bits (268), Expect = 1e-59 Identities = 355/494 (72%), Gaps = 10/494 (2%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 14634809 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 14634750 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||||||||| ||| || ||| || || || |||| Sbjct 14634749 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTA 14634691 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || || || || ||||| |||||||||||| ||||| | | | Sbjct 14634690 CAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAG 14634631 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || || || ||||| ||||||| |||||||| | ||| ||| Sbjct 14634630 TGAACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGAACGAGAGTTG 14634572 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 || || ||||||||| || |||| || ||||| ||||| || || || || || ||| Sbjct 14634571 TTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTA 14634512 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 |||||||| | || |||||||| | || || | || ||||| |||| ||||| Sbjct 14634511 TAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTT 14634452 Query 40887 TCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 |||| || | | |||| || ||||| || ||||||||| || | | ||| Sbjct 14634451 TCCCTGATCAAACTAGAGG--TTACCAAGG-AACCATGCATAGCACTGAATAGGGAACCG 14634395 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||||| ||||| || ||||| |||||||| Sbjct 14634394 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCC 14634335 Query 41004 TGGAAGACAAACAT 41017 ||||| |||| ||| Sbjct 14634334 TGGAATACAATCAT 14634321 >seq12 Length=27944835 Score = 140 bits (154), Expect = 9e-29 Identities = 224/319 (70%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| |||||||| ||| ||||||| ||| | |||||||||||||||||||| ||| | Sbjct 3609971 AGCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGATT 3609912 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 | || | | ||||||||| ||| || || ||| | || ||||| || Sbjct 3609911 AGCACGATTGATGATATCAGCCCAGGTATTAACAACGCGACCTTGGTTATCAACTACAGA 3609852 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 ||||| || || || || || ||||| |||| ||||||| ||||| | | || | Sbjct 3609851 TTGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTGAA 3609792 Query 40712 CCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGA 40770 ||| || || || || ||||| ||||||| |||||||| | ||| ||||| | Sbjct 3609791 CCAAATCCCTGCTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGAACGAGAGTTGTTAA 3609733 Query 40771 ATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAG 40830 | ||||||||| || |||| || ||||| ||||| || || | | || ||||||| Sbjct 3609732 AACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTATAAG 3609673 Query 40831 TCTCGCCTTCCTGACCAAA 40849 |||| | || |||| ||| Sbjct 3609672 TCTCTTCCTCTTGACAAAA 3609654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702379522408