Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq7 338 7e-88 seq12 165 9e-36 >seq7 Length=31244610 Score = 338 bits (374), Expect = 7e-88 Identities = 371/492 (75%), Gaps = 6/492 (1%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 14634809 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 14634750 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| | ||||| Sbjct 14634749 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 14634693 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| |||||||| |||||||| | ||| | || Sbjct 14634692 TACAGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGC 14634633 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | | ||||| | ||||| | ||||||||| | | | ||||| Sbjct 14634632 AGTGAACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 14634573 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||| ||| ||||| |||||||| || || || || || |||||||| || ||||| || Sbjct 14634572 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 14634513 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||||||||| ||||| || || ||||||| | || || || | ||||| || Sbjct 14634512 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGT 14634453 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 14634452 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 14634393 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| |||||||||||||| || ||||| || Sbjct 14634392 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCCTG 14634333 Query 67835 GAACACGAACAT 67846 ||| || | ||| Sbjct 14634332 GAATACAATCAT 14634321 >seq12 Length=27944835 Score = 165 bits (182), Expect = 9e-36 Identities = 227/316 (72%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 67360 CAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTC 67419 |||| ||||| |||| || ||||||| ||| | |||||||| |||||||| ||||| Sbjct 3609972 CAGCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGAT 3609913 Query 67420 CTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGT---CAACGA 67476 || | || | ||| || ||||| ||| || || | |||| || |||| | Sbjct 3609912 TAGCACGATTGATGATATCAGCCCAGGTATTAACAACG---CGACCTTGGTTATCAACTA 3609856 Query 67477 CGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAG 67536 | |||||||| || ||||| ||||| |||||||| | |||||| | ||| | |||| Sbjct 3609855 CAGATTGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAG 3609796 Query 67537 TGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGT 67596 ||||||| || | | ||||| | ||||| | ||||||||| | | | ||||||| Sbjct 3609795 TGAACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGT 3609736 Query 67597 TGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGT 67656 | ||| ||||| |||||||| || || || || || |||||||| | | ||| || | Sbjct 3609735 TAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTAT 3609676 Query 67657 AAGTCTCTTCTTCTTG 67672 |||||||||| ||||| Sbjct 3609675 AAGTCTCTTCCTCTTG 3609660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566947114957920