Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1 549 2e-151 seq7 342 6e-89 seq12 185 1e-41 seq9 123 3e-23 >seq1 Length=46096743 Score = 549 bits (608), Expect = 2e-151 Identities = 734/1010 (73%), Gaps = 9/1010 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || |||||||| || | Sbjct 45922502 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCT 45922561 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||||| ||| ||||||| ||| || || || ||||| || || ||||||| Sbjct 45922562 GATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGA 45922621 Query 66706 ACGT-CTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCA 66764 | || ||| || || || |||| ||||| | ||| || ||||| || |||||||| ||| Sbjct 45922622 AAGTACTCAAATTCAGGATCTTTCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCA 45922681 Query 66765 CGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGA 66824 || ||||| ||||| || || | | || || | ||| |||| | ||| | || || Sbjct 45922682 CGTAGGTTTAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGT 45922741 Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| | |||||||||||| ||||| | |||||| ||| |||| ||||||||| || Sbjct 45922742 ACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGG 45922801 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 ||||| ||||| || | || |||||||| ||||||||||| ||||||| | || || Sbjct 45922802 GACCAAAAGCGATTAACGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAA 45922861 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || ||| || ||||| ||||| || ||| | ||||| || || || || | ||| Sbjct 45922862 GCGCGGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACAGTTGCCCCA 45922921 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCAGGATAC-CT-GCTACACCCATCATATGAAACG 67062 ||||| || | |||| || |||| | |||| || || || |||||||||||||| | Sbjct 45922922 TGAATAGCGCATAGCAGAGCCGCACCTA--ATACTCTGGCAACTCCCATCATATGAAATG 45922979 Query 67063 GGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGA 67122 ||||||| ||||| ||||| |||||||| | |||||| | ||||||||| || |||| | Sbjct 45922980 GGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTA 45923039 Query 67123 CCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACAC 67182 | || ||| || | || ||||||| ||||| ||||| || || || || || | Sbjct 45923040 CGCCAAAACTCGGCGAAAAGAACCAACCGGATTGTCCCAGTGGATAAATCAGGAATAAGG 45923099 Query 67183 TAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGA 67242 ||||||||||||||| || |||||||| | ||| ||||| || || || | | || | Sbjct 45923100 AAACAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACA 45923158 Query 67243 GA-CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGC 67301 || || || |||||||| || || | ||||||||| ||||| || |||||||| ||||| Sbjct 45923159 GACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGA 45923218 Query 67302 GCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCA 67361 || |||||| |||| || || || | ||| ||| || |||||||| || | || Sbjct 45923219 GCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCC 45923278 Query 67362 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCT 67421 || ||||| ||||| | | ||| || | | | || ||||| || || || ||||| Sbjct 45923279 GGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCCGCG 45923338 Query 67422 GTGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 || | ||||| ||| || | ||| | ||| | ||| || || ||||| || Sbjct 45923339 GTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTT 45923398 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| || || || |||| ||| || || | || | ||||||| |||||||| | | Sbjct 45923399 ACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAAT 45923458 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || |||||||| || | ||| ||||| || |||| | ||| |||||| || Sbjct 45923459 AGGCCAGACCATCCTA-AAAAACAAAACGGTCTCTTCTAA-CCAGTCGTC 45923506 Score = 354 bits (392), Expect = 9e-93 Identities = 394/526 (75%), Gaps = 6/526 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| ||| || || ||||||| || |||||||| || | Sbjct 13891242 ATTAAAGAGCGTTGCCACGTGGC------TCCTCAGGGAATATAAGATTTTCATGAGGCT 13891295 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || ||||| ||| ||||||| ||| || || || ||||| || || ||||||| Sbjct 13891296 GATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGA 13891355 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | ||| || ||||| || |||||||| |||| Sbjct 13891356 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCAC 13891415 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| ||||| || |||| | || || | ||| |||| | ||| | || || | Sbjct 13891416 GTAGGTTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTA 13891475 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| | |||||||||||| ||||| | |||||| ||| |||| ||||||||| || | Sbjct 13891476 CAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGG 13891535 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| ||||| |||||||| ||||||||||| ||||||| | || || | Sbjct 13891536 ACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 13891595 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| ||||||||||| | ||||| || ||||| ||| | |||| Sbjct 13891596 CGCGGAAGGTATTTGCACCATCACCATCTTCGAATAGAGTGTTTTCTACGGTAGCCCCAT 13891655 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 | || || | |||| || | || | | || || || |||||||||||||| |||| Sbjct 13891656 GGATAGCGCATAGCAGAGCTGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGT 13891715 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAA 67111 |||| ||||| ||||| |||||||| | ||| || | | ||||||| Sbjct 13891716 TCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATGGATCGAAA 13891761 Score = 203 bits (224), Expect = 4e-47 Identities = 234/315 (74%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 66863 AAACGCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTC 66922 ||| |||| ||||||||| || ||||| ||||| || || || |||||||| |||||||| Sbjct 15262442 AAAAGCAACACCAAAGATTTGGGACCAAAAGCGATTAGCGGTGACCATTGAATAAGTTTC 15262501 Query 66923 TTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAG 66982 ||| ||||||| | || || || ||| || ||||| |||||||| ||| | || Sbjct 15262502 TTCAGCTTGAGTTGGGTTAAAAGCGCGGAAGGTATTTGCACCATCACCATCCTCAAATAG 15262561 Query 66983 AGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGC 67042 ||| || || || || | |||||||| || | |||| || | || | | || || Sbjct 15262562 AGTGTTTTCAACGGTTGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGC 15262621 Query 67043 TACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAG 67102 || |||||||||||||| |||||||| ||||| ||||| |||||||| | |||||| | Sbjct 15262622 AACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGAT 15262681 Query 67103 GAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAG 67162 ||||||||| || |||| || || ||| || || || ||||||| ||||| ||||| Sbjct 15262682 GAATCGAAATATCGCTGCTACGCCAAAACTCGGTGCAAAGAACCAACCGGATTGTCCCAG 15262741 Query 67163 AGGGTAGATGAGAAA 67177 || || || || || Sbjct 15262742 TGGATAAATCAGTAA 15262756 >seq7 Length=31244610 Score = 342 bits (378), Expect = 6e-89 Identities = 369/489 (75%), Gaps = 0/489 (0%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| |||||||||||||| || ||||| || ||||| ||||||||||| | Sbjct 14634809 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 14634750 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 | ||| ||||||| | || ||||| ||| | ||| ||| ||||||| | Sbjct 14634749 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 14634690 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||| || || |||||||| ||||| || |||| ||| | ||||| Sbjct 14634689 AGATTGGTTGAAATTGAATCCGTTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 14634630 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 |||||| || || | |||||||| ||||| | ||||||||| | ||||| |||||||| Sbjct 14634629 GAACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 14634570 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 || ||||| |||||||| | || || || || ||||| || || ||||| || || Sbjct 14634569 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 14634510 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||||||||| |||||||| || ||||||| | || ||| || ||||||||||||| Sbjct 14634509 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCGGATTCGTTTTCAGTGGTTTC 14634450 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || ||| || |||| |||||||||||| |||||||| || || || || || Sbjct 14634449 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 14634390 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| || || | ||| || || || ||||| |||||||| || ||||| ||||| Sbjct 14634389 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGTTCTGCCTGGAA 14634330 Query 68319 CACCAGCAT 68327 || | ||| Sbjct 14634329 TACAATCAT 14634321 >seq12 Length=27944835 Score = 185 bits (204), Expect = 1e-41 Identities = 230/315 (73%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 67841 CAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAAC 67900 |||| ||||| |||| || |||| || ||| | || ||||| ||||||||||| | | Sbjct 3609972 CAGCTAGGTCTAGAGAAAAACTGTGAGCATTATGTTCGTGCATTACTTCCATACCAAGAT 3609913 Query 67901 CAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAG 67960 ||| || |||| | || ||||||||| | ||| ||| |||||| | || Sbjct 3609912 TAGCACGATTGATGATATCAGCCCAGGTATTAACAACGCGACCTTGGTTATCAACTACAG 3609853 Query 67961 ACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGA 68020 | ||||| || ||||| || || |||||||| | ||| || |||| ||| | ||||||| Sbjct 3609852 ATTGGTTTAAATTGAATCCGTTTAGGTTGAAAGTCATAGTACTAATACCTAAAGCAGTGA 3609793 Query 68021 ACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGA 68080 |||| || || | |||||||| ||||| | ||||||||| | ||||| |||||||| | Sbjct 3609792 ACCAAATCCCTGCTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAA 3609733 Query 68081 ACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAG 68140 | ||||| |||||||| | || || || || ||||| || | | ||| || |||| Sbjct 3609732 AACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGTCATAATATTATAAG 3609673 Query 68141 TCTCTTCTTCTTGAC 68155 ||||||| ||||||| Sbjct 3609672 TCTCTTCCTCTTGAC 3609658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 17837685 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 17837742 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 17837743 TCTACCACTGAGCTACTGAGGA 17837764 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 21373148 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 21373205 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 21373206 TCTACCACTGAGCTACTGAGGA 21373227 >seq9 Length=26294017 Score = 123 bits (136), Expect = 3e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 66966 TCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCA 67025 ||||| || ||| | ||||| || || || || | |||||||| || | |||| || Sbjct 19895316 TCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAGAGCC 19895375 Query 67026 CCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAAT 67085 | || | | || || || |||||||||||||| |||||||| ||||| ||||| ||| Sbjct 19895376 GCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 19895435 Query 67086 CCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAAC 67145 ||||| | |||||| | ||||||||| || |||| || || ||| || || || ||| Sbjct 19895436 CCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAAC 19895495 Query 67146 CAACTCGATTGACCCA 67161 |||| ||||| |||| Sbjct 19895496 CAACCGGATTGTCCCA 19895511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572054314191840