Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 1e-11 >seq2 Length=39559433 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || | || ||||| | |||| ||| || ||| || ||||| Sbjct 31556144 ATCCCTCCACGAAGACGGAGGACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCG 31556203 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || |||| ||| || |||||||| || | ||||| ||||||||| Sbjct 31556204 GCCAATGTGCGCCCATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGT 31556263 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| || ||||| || || || || || Sbjct 31556264 GGGATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCC 31556323 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || ||||| | || || | || |||||||| Sbjct 31556324 ACTTCCAGAGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 31556373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135864229600