Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 138 3e-27 seq8 134 4e-26 seq6 107 6e-18 seq1 100 8e-16 seq4 96.9 1e-14 seq3 95.1 4e-14 >seq5 Length=31082981 Score = 138 bits (152), Expect = 3e-27 Identities = 232/332 (70%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2737342 ATTTCTTACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2737401 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| || || || ||||| |||||||| ||||| | | |||||| Sbjct 2737402 CTGGATATATCCAGTCTCCGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2737461 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2737462 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCTACAAA 2737521 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || || ||| || || ||||| |||| || | | || | | Sbjct 2737522 CCCACGACTTTCAGGACCATAGTCATCTTTCGTGAAGTGGGGCAATGTTC-GATCGGTGA 2737580 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 |||| ||||||| ||||| || ||||| ||||||||||| | || | | ||||||| Sbjct 2737581 -AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATCTGT 2737639 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGC 302867 |||||||| | |||||| || ||||| || Sbjct 2737640 GAAATATTGATGAAACTGCCTTTTGAGCCTGC 2737671 >seq8 Length=29853973 Score = 134 bits (148), Expect = 4e-26 Identities = 237/342 (69%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2765365 ATTTCTTACAGTACCATCATATTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2765424 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || ||||| |||||||| | ||| | | |||||| Sbjct 2765425 CTGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAAACCTTCTCTACCACC 2765484 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2765485 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCTCTAAGGTAAGAGTTCTCCACAAA 2765544 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || || || || || ||||| |||| || | | || | | Sbjct 2765545 CCCACGACTTTCAGGACCATAATCATCTTTTGTGAAGTGAGGCAATGTTC-GATCAATGA 2765603 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 |||| ||||||| ||||| || ||||| ||||||||||| | || | | |||| || Sbjct 2765604 -AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGT 2765662 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | ||| || || ||||| ||| | |||||| Sbjct 2765663 GAAATATTGATGAAACTTCCTTTTGAGCCTGCAGTAACCATA 2765704 >seq6 Length=34615992 Score = 107 bits (118), Expect = 6e-18 Identities = 321/475 (68%), Gaps = 24/475 (5%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944 ||||| || ||||| || || || |||| ||||| ||||| ||| | | ||| || Sbjct 31291596 ATATCAGCCCTGTTGGTGGCAGC-AATA--ACAAT-GATTCCAGTGTTCCCCTCAAAACC 31291651 Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004 |||||| || | | ||||| | ||||||||||||||||||||| ||| | | Sbjct 31291652 ATCCATCTCAGTCAGTAACTGATTCAAAGTTTGTTCCCTTTCATCATTTCCACCAC--CA 31291709 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| | || | ||||| | ||||||||||||||||| |||| || | | || Sbjct 31291710 AT-ACCTG--TC-CCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAATACTATGCA 31291765 Query 289065 CGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 || | ||| | | || ||| ||| | || | |||||||| || |||| || Sbjct 31291766 AGGGGCATTCTCCTTTGCCTTCTTGAAAAGA--TCACGAACACGGGAGGCACCAACTCCC 31291823 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCC 289181 ||| |||| || ||||| ||||| | |||| |||| | || | ||| ||||| || Sbjct 31291824 ACAAACATCTCCACAAACTCAGATCCTGATA-TTGAGAAAAACGGCACACCAGCTTCTCC 31291882 Query 289182 TGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCC 289241 ||| | ||| | || || | |||||||| |||||||| ||||| | | ||||| || Sbjct 31291883 TGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGTCCAACAAGCAGAACACC 31291942 Query 289242 CTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301 || || | || ||| ||| | | | || || |||| || || || || | Sbjct 31291943 TTTAGGGATGCGAGCACCAACAGCGGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCAC 31292002 Query 289302 TTCC-TCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 |||| | ||| || | ||||| || || ||| || || |||||| |||| |||| Sbjct 31292003 TTCCATGAAG-TCTTGCTTTGCTTCGTCGACA-CCAGCAACATCATCAAATGTAA 31292055 Score = 100 bits (110), Expect = 8e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 156045 AAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || ||||| || |||||||| ||| ||||| ||||| || || || | |||||| ||| Sbjct 2940641 AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCCGTATCATTGAAAACA 2940700 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | ||||||||||| ||| ||||| || || ||||| ||||| || |||| |||| Sbjct 2940701 CGTAGCATAGGAACAATCCCATTAGAGGTTCCATTTGTTCCTCGGATATAGCTCCCAGTA 2940760 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | |||| ||| |||| || ||||| || || | |||| || ||| ||| Sbjct 2940761 GCTCGAATATTGTGAACTGATACACCAATGCCTCCAGCAGATTTGCTTATGACAGCACAT 2940820 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | ||||| | || || ||||| ||||||| ||| Sbjct 2940821 TCCTTCAAAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 2940864 >seq1 Length=46096743 Score = 100 bits (110), Expect = 8e-16 Identities = 216/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||||||||| |||||||| | | || || ||| || | || | | Sbjct 38763520 CCAATTGCATCAATTTCATCAATGAATACGATACTAGGTGAACACTGCCGAGCTTCTTGA 38763579 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| | | || | ||||| ||||| ||||||| ||||||| | || || ||| | Sbjct 38763580 AATAAGTTACGCACCCTGGATGGTCCAACACCAACAAACATTTCCATGAAGTCTGAACCA 38763639 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || | ||| | |||| | || ||||| || | || || || ||||| Sbjct 38763640 GA-AATAGACAAGAAGGGCACATCAGACTCTCCTGCAGTAGCTTTAGCAAGGAGAGTCTT 38763698 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 ||||| || || || || | | ||| | |||||||||| |||||| ||||| || Sbjct 38763699 TCCTGTGCCTGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTTGCTCCCAG--TTCT 38763756 Query 289268 T-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||||| || | || | || | |||| |||| || ||| | ||| || ||| Sbjct 38763757 TCATATTTCTTGGGATTTTTCAGGAAATGAACAAATTCCATAATTTCTTGTTTGGCTTCA 38763816 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 38763817 TCACAGCCAGCTACATC 38763833 >seq4 Length=33711903 Score = 96.9 bits (106), Expect = 1e-14 Identities = 169/240 (70%), Gaps = 11/240 (5%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATT 289086 ||| |||||||||| ||| ||||||||||| | | | || | | || | | || || Sbjct 20976635 ACCCACAGCATCAAGTTCATCAATGAAAATTATAGATGGGGCAGCTTCTTTGGCCTCCTT 20976694 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | ||||| || || ||||||| ||||| ||||| | | ||| ||||||||| | Sbjct 20976695 G--AATAAATCCCTGACACGGGCGGCTCCTCTTCCAACGAAAACTTCAACAAATTCACTA 20976752 Query 289147 GCGGATAC-TTGAATGAATG--TTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||||| || ||| || | || || || || ||||| |||||||| |||||||| Sbjct 20976753 GCGGAAACAGAGAAAAAAGGAATTCCA---GCCTCTCCTGCAACTGCCCTTGCCAGAAGA 20976809 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGC 289262 || || || ||||| || || || | | ||||| ||| | |||| ||| || |||||| Sbjct 20976810 GTTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCCCAGC 20976869 >seq3 Length=38925377 Score = 95.1 bits (104), Expect = 4e-14 Identities = 207/303 (68%), Gaps = 14/303 (5%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || ||||| |||||||| | || |||||||| ||||| |||||| |||| ||| | Sbjct 27435674 GCAATAAGCCCACACTTCTCGCATACATGGACTCTGTACGCATCACTCTGGTCAAATAAC 27435615 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCG---TGTGAAATCATACAATCACGCTCCATTTCA 251520 | ||||| ||| | ||||| || || | |||||| || || | |||||| || Sbjct 27435614 CTTTCCTTGAGGAA---AAATGCAGCGCCATGAGCAATCATGCAGTCCCTCTCCATCTCT 27435558 Query 251521 CCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACC 251580 ||||| || ||||||||||| || | | ||||| ||||| || | || || | | Sbjct 27435557 CCGAAGCGGAGACCACCATCACGTGAGCGCCCCTCTGCAGGTTGCCTCGTAAGTATTTGC 27435498 Query 251581 ATAGGACCGATGGAGCGGCTA---TGTTGCTTATCATTTACCATATGCTTGAGACGCTGG 251637 | |||||| | | || ||| || ||| |||| ||||||||||| || | |||| Sbjct 27435497 ACAGGACC-ACG--GCCTCTAGAGTGGATCTTGTCATCCACCATATGCTTAAGCCTCTGG 27435441 Query 251638 TAGAATGCGGGACCGATGAAGATGCTCGAAG-GCATTTGCTCTCCAGTTAGAGCGTTATA 251696 || | | ||||| | ||| || | | || |||| || |||||| || | || || Sbjct 27435440 TAATAAGTAGGACCAAGGAAAATCATGGCAGTTAATTTTCT-TCCAGTGTGACCATTGTA 27435382 Query 251697 CAT 251699 ||| Sbjct 27435381 CAT 27435379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817373708044