Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq1 533 2e-146 seq7 331 1e-85 seq12 194 2e-44 seq9 120 3e-22 seq2 102 9e-17 >seq1 Length=46096743 Score = 533 bits (590), Expect = 2e-146 Identities = 727/1008 (72%), Gaps = 5/1008 (0%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 || |||||| ||| | |||| || ||||||||| | || |||||||| ||| | ||| || Sbjct 45923506 GACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTTTT 45923449 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 45923448 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 45923389 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || ||||| || | || ||||||||| | || ||| || || | || || || || Sbjct 45923388 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCGGCAGTT 45923329 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || ||||| | | | | || ||| | | ||||| ||||| || || | || Sbjct 45923328 TCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCACAA 45923269 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 ||| |||| || ||||| ||| | || || | |||| |||||| || ||||| || Sbjct 45923268 GGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATGGG 45923209 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTAT 159664 || || || ||||| ||||||||| | ||||| |||||||| || || ||| | | | Sbjct 45923208 GCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT-T 45923150 Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724 || ||||| ||||| ||| | |||||||| || || ||||||||||| | | ||||| Sbjct 45923149 GCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATTCCT 45923090 Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784 || || ||| |||| || ||| ||||||| || | ||| ||||| || ||||| || Sbjct 45923089 GATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGCGAT 45923030 Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844 ||| ||||| | | ||| | ||||||||||| || |||||||| || || || ||||| Sbjct 45923029 ATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 45922970 Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904 |||||||||||| | || |||||| || || || | || || ||||| | ||||| Sbjct 45922969 GATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCAACTGT 45922910 Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964 || ||||| || | ||| || || || ||||||||||| || ||| | |||| Sbjct 45922909 GGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAAC 45922850 Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024 ||||| || || ||||| || |||||||| | || ||||| ||||| || ||||| || Sbjct 45922849 TCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCTTTGG 45922790 Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084 | |||| ||||| || || || ||| | |||||||| ||| | ||||| || || | || Sbjct 45922789 TGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACCGG 45922730 Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144 | | |||| |||||||| | | ||||| ||||| || || ||||| || || || Sbjct 45922729 TTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATGACTT 45922670 Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG-ACCTTCTACACCAAAA 160203 ||| || || ||| | ||||| ||||||| ||||||||| || ||||||||||||| Sbjct 45922669 CGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACCAAAA 45922610 Query 160204 ACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAA 160263 | || || || ||||| || | ||||| ||| ||||| || ||||| || ||||||| Sbjct 45922609 ATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAA 45922550 Query 160264 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 45922549 ATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 45922502 Score = 345 bits (382), Expect = 5e-90 Identities = 383/511 (75%), Gaps = 6/511 (1%) Strand=Plus/Minus Query 159801 TTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGT 159860 ||| | ||||||||||| || |||||||| || || || ||||||||||||||||| || Sbjct 13891746 TTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 13891687 Query 159861 ATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTAT 159920 || |||| | ||| || || | || |||||||| | ||| ||||| ||||| || | Sbjct 13891686 GTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTATTC 13891627 Query 159921 GAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACT 159980 |||||||| || ||||||||||| || ||| | ||||||||| || || ||| Sbjct 13891626 GAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACT 13891567 Query 159981 TACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAAC 160040 || || ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| || Sbjct 13891566 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAAT 13891507 Query 160041 AAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCT 160100 || || ||| | |||||||| ||| | ||||| || || | ||| | |||| || Sbjct 13891506 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCT 13891447 Query 160101 ATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATC 160160 |||||| | ||||||| ||||| || || ||||| || || ||||| || || ||| Sbjct 13891446 ATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 13891387 Query 160161 AGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAA 160220 | ||||| |||||||| ||||||||||| |||||||||||||| || || || ||||| Sbjct 13891386 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAG 13891327 Query 160221 GGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAA 160280 || | ||||| ||| ||||| || ||||| || |||||||| |||| ||||| || Sbjct 13891326 GGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAG 13891267 Query 160281 GAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 || ||| | |||||||| ||||||| Sbjct 13891266 GA------GCCACGTGGCAACGCTCTTTAAT 13891242 Score = 199 bits (220), Expect = 4e-46 Identities = 236/320 (74%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 159720 TTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCA 159779 || || || || ||| |||| || ||| ||||||| || || ||| ||||| || ||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 159780 GCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTC 159839 || || ||| ||||| | | ||| | ||||||||||| || |||||||| || || || Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 159840 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTT 159899 ||||||||||||||||| || || |||| | || || || | || || ||||| | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 159900 ACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGAT 159959 || || || ||||| || | ||| ||||| || ||||||||||| || ||| | Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 159960 TCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 160019 ||||||||| || || ||||| || |||||||| || || ||||| ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 160020 TTCGGTATTGCGTTTTCTAA 160039 || ||| |||| ||||| || Sbjct 15262456 TTTGGTGTTGCTTTTTCCAA 15262437 >seq7 Length=31244610 Score = 331 bits (366), Expect = 1e-85 Identities = 369/490 (75%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 158078 ATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTT 158137 ||| |||||||||| |||||||| |||||||||||||| || || || ||| | ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 158138 GCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCA 158197 ||||| |||||||| || || || ||| ||||||||| || | || || || | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 14634439 Query 158198 CTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGA 158256 | | || | ||||| ||||||| || || || | ||||||| || |||||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 158257 GGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATA 158316 ||||||||| ||||| || || || || ||||| || || || || || ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 158317 CGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGG 158376 ||| || |||||||| ||||| || ||||||||| | ||||| |||||||| | || Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 158377 CATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTT 158436 || |||||||| || | || | || ||||| |||||||| ||||| ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 158437 CAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAA 158496 |||||| || | ||||| | || ||||| || | || || ||||| ||| | | || Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 158497 CCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 158556 ||| ||| ||||||||||||||| ||||| || ||||| || ||||||||||| || || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 158557 CCTTGCTGCT 158566 ||| |||||| Sbjct 14634800 CCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 194 bits (214), Expect = 2e-44 Identities = 232/315 (74%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 158250 GTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCT 158309 |||||||||||||||| ||||| || | | || ||||| || || || || || |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 158310 TCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158369 ||||||| ||| || |||||||| ||||| || ||||||||| | ||||| ||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 158370 TTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTT 158429 | | || || |||||||| || | || | || ||| | |||||||| ||||| | Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 158430 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 158489 |||| || ||||| || | ||||| || ||||| || | || |||||||| ||| Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 158490 TACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158549 | | || || ||| ||||||||||||||| ||||| || | ||| || |||| || Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTT 3609957 Query 158550 CACTCGACCTTGCTG 158564 | || ||||| |||| Sbjct 3609958 CTCTAGACCTAGCTG 3609972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 160130 TCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 160189 || ||| || || ||||| || || ||| | ||| | |||||||| ||||||||||| Sbjct 26735462 TCCTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGAC 26735521 Query 160190 CTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGA 160249 |||||||||||||| || || || ||||| || | |||| ||| ||||| || || Sbjct 26735522 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGTGTGGATGGCAGCTCAGGA 26735581 Query 160250 TCAACC 160255 ||| || Sbjct 26735582 TCAGCC 26735587 >seq9 Length=26294017 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 159736 TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCC 159795 |||| || ||| ||||||| || || ||| ||||| || ||||| || ||| ||||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 159796 TGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTG 159855 | | ||| | ||||||||||| || |||||||| || || || |||||||||||||||| Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 159856 CTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACAC 159915 | || || |||| | || || || | || || ||||| | || || || ||||| | Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 159916 TGTATGAAGATGGAGA 159931 | | ||| || || || Sbjct 19895331 TATTTGAGGACGGTGA 19895316 >seq2 Length=39559433 Score = 102 bits (112), Expect = 9e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 || |||||| | | |||| || ||||||||||| || |||||||| ||| | ||| || Sbjct 8166098 GACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 8166039 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 8166038 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8165979 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGT 159461 || ||||| || | || ||||||||| | || ||| Sbjct 8165978 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 8165943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548374317743840