Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1 304 1e-77 seq7 284 1e-71 seq12 168 8e-37 seq2 111 2e-19 >seq1 Length=46096743 Score = 304 bits (336), Expect = 1e-77 Identities = 691/1039 (67%), Gaps = 24/1039 (2%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| | ||||| ||||| || || | ||||||||||| Sbjct 45923518 TTTGATATTATGGACGACTGGTTAGA-AGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || ||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 45923341 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || |||| || | | | || | | ||| | || ||||| Sbjct 45923340 ACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 45923281 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||| ||| || || |||| |||||||||||| || |||| ||||| Sbjct 45923280 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 45923221 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| | Sbjct 45923220 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 45923161 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | || ||||| || ||| | | || || | ||||| || || Sbjct 45923160 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 45923101 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | | || || || ||||| | ||||| |||||||||| | || || || Sbjct 45923100 TCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGC 45923041 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 45923040 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 45922981 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 ||||||||||||||||| || || | || | |||| || | ||||| || || ||| Sbjct 45922980 CCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCAT 45922921 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 || ||||| || | ||||| | | ||| | || ||| ||| Sbjct 45922920 GGGGCAACTGTGGAAAACACTCTATTTGAGG------------ACGGTGATGGT------ 45922879 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 | | || ||| | || || | || || || | ||||| |||||| ||| | Sbjct 45922878 ---GCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 45922822 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || | ||| | || ||||| || || |||||| | || ||||| || ||| | | ||| Sbjct 45922821 ACCGTTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTA 45922762 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||| | || ||||| |||| ||| | |||| |||| || | || Sbjct 45922761 CATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTC 45922702 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 || || || || ||||| | || || ||||| || || || || || | ||||| || Sbjct 45922701 GGCCTGGCTCTAAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAA 45922642 Query 74264 GACCCAGAGTTTGA-AACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 74322 || || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 45922641 GATCCTGAATTTGAGTACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGC 45922582 Query 74323 ATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCC 74382 |||||| || || ||||| || ||||| || || | ||||| || || || | || Sbjct 45922581 GTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 45922522 Query 74383 ACGAGGCAACGCACTATAA 74401 ||| || ||||| || ||| Sbjct 45922521 ACGTGGAAACGCTCTTTAA 45922503 >seq7 Length=31244610 Score = 284 bits (314), Expect = 1e-71 Identities = 356/486 (73%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 72733 ATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTA 72792 ||| | || ||||| |||||||| ||||| || ||||| || || || ||| ||||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 72793 GCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCT 72852 || ||| | ||||| ||| || |||||||| ||||| ||||| | || || || | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 72853 CTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAA 72912 | ||||| || || || || ||||| || | || || | || || ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 72913 GAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTAT 72972 ||||| || ||||| ||||| || |||||||| || || || ||||||||||||| ||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 72973 GCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGT 73032 || || |||||||||||||| |||||||||||| | |||| | ||||||| | Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 73033 GTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTC 73092 | ||||| || | | ||||| |||| ||||| |||||||| ||||||||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 73093 AACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAA 73151 |||||||| || || ||| || || || || | || |||| ||| | | || Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 73152 CAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGA 73211 | | || || ||||| |||||||| ||||| ||| | ||||| ||||||||||| ||||| Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 73212 CCTAGC 73217 |||||| Sbjct 14634800 CCTAGC 14634805 >seq12 Length=27944835 Score = 168 bits (186), Expect = 8e-37 Identities = 224/311 (72%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 72907 CAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTC 72966 ||||| ||||| || ||||| ||| | | |||||||| || || || ||||||||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 72967 CAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTA 73026 || ||||| || |||||||||||||| |||||||||||| | |||| | |||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 73027 GTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTC 73086 | | | ||||| || | | ||||| |||| ||| | |||||||| ||||||||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 73087 AACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTT 73146 || || |||||||| || || ||| | || |||| || |||| ||| | Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 73147 CTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCA 73206 | || | || || ||||| |||||||| ||||| ||| ||||| |||| || | Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTTCT 3609959 Query 73207 CTAGACCTAGC 73217 ||||||||||| Sbjct 3609960 CTAGACCTAGC 3609970 >seq2 Length=39559433 Score = 111 bits (122), Expect = 2e-19 Identities = 184/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 |||||| || | ||||| ||||||| || || | ||| || || | |||| ||| | Sbjct 19905520 TTTGACATTATGGATGACTGGTTAAGAAGGGACCATTTTGTTTTT-TATGATGATCTAGC 19905578 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 |||| ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 19905579 GTTTTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 19905638 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || ||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 19905639 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 19905698 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || |||||||| || || |||| || | | | || | | ||| | || ||||| Sbjct 19905699 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 19905758 Query 73604 CCAGAGGCACAAGGAGATCTTGT 73626 ||||| |||||||| ||| |||| Sbjct 19905759 CCAGAAGCACAAGGGGAT-TTGT 19905780 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/148 (75%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| ||||| ||||| || || | ||||||||||| Sbjct 8166110 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGC 8166051 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 8166050 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 8165991 Query 73484 GTGACCTCATGGTACACACATGGTATTG 73511 || || || ||||| || ||||| |||| Sbjct 8165990 GTAACTTCTTGGTATACCCATGG-ATTG 8165964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572873514068960