Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 8e-16 seq6 86.0 5e-12 >seq5 Length=31082981 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110287 CAAAACTTTA--ACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTCGGC 110344 |||| |||| |||||||||||||||||| | || ||| | || || | | | Sbjct 9801134 CAAATCTTTGTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTCAGACACGATTGAC 9801075 Query 110345 CAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATT 110404 | || ||| |||||| ||||| |||||| | ||| |||||| || | || || Sbjct 9801074 AACGTGAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTGATC 9801015 Query 110405 TATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAA 110464 | ||| || || ||||| ||||||| | | || | || |||||||||||||| || ||| Sbjct 9801014 TTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAACATTCAGAAGGAA 9800955 Query 110465 TCTACGTTGCACATGGTG 110482 || || |||||| ||||| Sbjct 9800954 TCCACTTTGCACCTGGTG 9800937 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | |||||||| |||||||| | || ||| || | Sbjct 9801593 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTCGAGTCTTCC 9801534 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||||| ||||| || ||| | || ||| || Sbjct 9801533 GATACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 9801474 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||| ||||| | | || |||| ||||||||| Sbjct 9801473 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTGGCTGATTACAAC 9801414 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 ||||| || || || || | ||| | ||| |||| || Sbjct 9801413 ATTCAGAAGGAGTCCACTCTCCACCTCGTGCTAAGGCT 9801376 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 |||||| || || ||||| ||| | || ||||| || |||||| | || ||| || Sbjct 26219906 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTC 26219965 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || |||||| || || || ||| | ||| ||| | Sbjct 26219966 A-GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 26220024 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || ||||| || | || ||||| ||||||||||||| | | || | || || |||| Sbjct 26220025 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACA 26220084 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||| || || || ||||| | ||| ||||| Sbjct 26220085 ACATCCAGAAGGAGTCTACCCTCCACTTGGTG 26220116 >seq6 Length=34615992 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | || ||||| ||||| ||| | || ||| | | Sbjct 32010382 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCC 32010441 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 32010442 GACACTATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 32010501 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || | |||||||||||| Sbjct 32010502 CAGCGTCTGATATTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTTGCGGATTACAAC 32010561 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| ||||| Sbjct 32010562 ATCCAGAAGGAGTCCACACTCCACTTGGTG 32010591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841539621916