Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq6 95.1 1e-14 >seq5 Length=31082981 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||| ||||| ||| | || ||||| || |||||| | || ||| ||| Sbjct 26219906 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTC 26219965 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || ||||| ||||| || ||| | ||| ||| | Sbjct 26219966 A-GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 26220024 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| || | || ||||| ||||||||||| | | || | || ||||||| Sbjct 26220025 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACA 26220084 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || ||||||||||| | ||| ||||| Sbjct 26220085 ACATCCAGAAGGAGTCTACCCTCCACTTGGTG 26220116 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107570 CAAAACTTTA--ACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGTCGGC 107627 |||| |||| || ||||||||||||||| | || ||| | || || | | | Sbjct 9801134 CAAATCTTTGTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTCAGACACGATTGAC 9801075 Query 107628 CAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATT 107687 | || ||| ||||||| || || |||||| | ||| |||||||||| | || || Sbjct 9801074 AACGTGAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTGATC 9801015 Query 107688 TATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAG 107747 | ||| || || ||||| ||||| | | || | || || ||||||||||| ||||| Sbjct 9801014 TTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAACATTCAGAAGGAA 9800955 Query 107748 TCTACGTTGCACATGGTG 107765 || || |||||| ||||| Sbjct 9800954 TCCACTTTGCACCTGGTG 9800937 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || ||||| |||||||| | || ||| || | Sbjct 9801593 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTCGAGTCTTCC 9801534 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || || ||| | || ||| ||| Sbjct 9801533 GATACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 9801474 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || |||| || |||||| Sbjct 9801473 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTGGCTGATTACAAC 9801414 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| | ||| Sbjct 9801413 ATTCAGAAGGAGTCCACTCTCCACCTCGTG 9801384 >seq6 Length=34615992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || ||||| |||||||| | || ||| || Sbjct 31537757 ATGCAAATCTTTGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTTGAGTCTTCT 31537698 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || |||||| | ||| ||| ||| Sbjct 31537697 GATACGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATTCCCCCGGACCAG 31537638 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | || || || ||||| ||||| | | || | || ||||||||| Sbjct 31537637 CAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTCGCAGACTACAAC 31537578 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || |||||| ||||| Sbjct 31537577 ATCCAGAAGGAGTCCACCTTGCACCTGGTG 31537548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876741664268