Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 seq5 122 7e-23 seq6 105 5e-18 seq4 98.7 8e-16 >seq2 Length=39559433 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||||||| || || || | || || |||||||| |||||||||||||| || || Sbjct 31556603 CCACCCCTCAAGCGAAGAACAAGGTGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCG 31556662 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || ||||| ||||||||| | || | || || || || || || Sbjct 31556663 AGTGTCCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGGGGG 31556722 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || ||| ||| | || | ||||| ||| ||||| Sbjct 31556723 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCGGAACTCTCTACA 31556782 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||| |||||||| || || || ||||| |||||||| Sbjct 31556783 TCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 31556829 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || ||||||||||| || || || || |||||||| ||||| || Sbjct 31556147 CCTCCACGAAGACGGAGGACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 31556206 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || ||||| || |||||| | || | || ||||| || || || Sbjct 31556207 AATGTGCGCCCATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGG 31556266 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | |||| |||||| | || | |||||||| || ||| Sbjct 31556267 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCCACT 31556326 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || |||||||| | || || ||||| |||||||| Sbjct 31556327 TCCAGAGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 31556373 >seq5 Length=31082981 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | || || || | || || ||||| ||||| |||||||| ||||| || Sbjct 9801822 TCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGC 9801881 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| |||||||| ||||| ||| | || | | || || || || || Sbjct 9801882 AAGGGTGCGGCCATCCTCGAGTTGCTTGCCCGCAAAGATGAGGCGCTGTTGGTCAGGTGG 9801941 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| ||||| || ||| || | ||||| | || | || || || || | Sbjct 9801942 AATACCCTCCTTGTCCTG-AATCTTGGCCTTGACGTTGTCGATCGTATCTGAGGACTCAA 9802000 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| || |||||||| | || || ||||| |||||||| Sbjct 9802001 CCTCGAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 9802049 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||| || | |||||||| || |||||||| ||||| || | |||||| Sbjct 9800931 ACGGAGCACCAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGGCC 9800990 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||||||| | |||| | ||||||||||| ||||| || || || Sbjct 9800991 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCCTTCCTT 9801050 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| ||| || | || | ||||| || || || || || || | Sbjct 9801051 GTCCTG-AATCTTTGCTTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCCAGGGTAA 9801109 Query 29750 TAGTTTTGCCAGT 29762 | |||||||| || Sbjct 9801110 TGGTTTTGCCGGT 9801122 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | ||||| || | ||||| || || || || || ||||| || || || Sbjct 26219906 TCCACCCCTAAGGCGCAGAACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 26219847 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || || || |||||||| | || | ||| ||||| || || || Sbjct 26219846 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGTCTCTGCTGGTCTGGGGG 26219787 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || | || || || | || | ||||| || || || Sbjct 26219786 GATGCCCTCTTTGTCCTGGATCTTCGCCTTCACGTTGTCAATCGTGTCTGATGACTCGAC 26219727 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || |||||||| | ||| || || || ||||||||| Sbjct 26219726 CTCAAGCGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCATT 26219678 >seq6 Length=34615992 Score = 105 bits (116), Expect = 5e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| |||||||| ||||| |||||||| ||||| || Sbjct 30154863 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTGGACTCTTTCTGAATGTTGTAATCAGC 30154804 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || || ||||| || || | |||| ||||||||||| || || Sbjct 30154803 TAATGTACGTCCATCTTCCAGCTGTTTCCCTGCGAAAATCAGCCTTTGCTGATCTGGGGG 30154744 Query 29679 AATACCCTCTTTGTCTTG 29696 |||||||||||||| || Sbjct 30154743 GATACCCTCTTTGTCCTG 30154726 >seq4 Length=33711903 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || || || |||||||||||||||| || || ||| || || || |||||| Sbjct 30264479 GTGGACTCCTTCTGGATGTTATAATCCGCAAGAGTACGCCCATCCTCAAGCTGCTTGCCA 30264420 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TT 29708 || | || | | ||||| ||||| || || ||||| ||||| || ||| || | || Sbjct 30264419 GCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG-AATCTTAGCCTT 30264361 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || || || || || | || || || |||||||| | ||| Sbjct 30264360 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 30264301 Query 29769 TTTAACAAATATCTGCATTTTAAAAC 29794 ||||||||||||||||| | |||| Sbjct 30264300 CTTAACAAATATCTGCATCTGGAAAC 30264275 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | || || ||||| || || || ||||| || || |||| ||| || | Sbjct 30264953 CGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTACGTCCA 30264894 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | || | | |||||||| || ||||||||||| ||| Sbjct 30264893 TCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCTGGTGGAATACCCTCCTTG 30264834 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||||||| || || || || || || Sbjct 30264833 TCCTGGATCTTGGCCTTCACATTGTCGATTGTGTCAGAGGACTCAACCTCCAGGGTGATG 30264774 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 30264773 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 30264739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219143661692