Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq1 511 6e-140 seq7 288 1e-72 seq12 152 6e-32 seq9 134 2e-26 seq3 91.5 2e-13 >seq1 Length=46096743 Score = 511 bits (566), Expect = 6e-140 Identities = 726/1008 (72%), Gaps = 11/1008 (1%) Strand=Plus/Minus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 |||| |||||| ||| | || || ||||| ||| | || |||||||| || | ||| Sbjct 45923508 TGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTT 45923451 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 45923450 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 45923391 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 179127 |||| |||||||| | || ||||||||| | |||||| || ||||||| | || || Sbjct 45923390 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCGGCA 45923332 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 45923331 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 45923272 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 45923271 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 45923212 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306 || || || || ||||| || |||||| | ||||| |||||||| || || ||| || Sbjct 45923211 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 45923152 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | | || ||||| ||||| ||| | || |||| || || || || || ||| |||| Sbjct 45923151 T-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATT 45923093 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 || || || ||||| ||||||||| ||||||||||| |||| ||||| || || || Sbjct 45923092 CCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGC 45923033 Query 179427 GATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCA 179486 ||| ||| ||||| | || ||||| ||||| || || || ||||| | ||||| ||||| Sbjct 45923032 GATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCA 45922973 Query 179487 CATGATGGGAGTTGC-AG-GTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTA 179544 |||||||||||||| || |||| | |||| |||||||| | ||||||||||| | | Sbjct 45922972 TATGATGGGAGTTGCCAGAGTAT--TAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCA 45922915 Query 179545 ACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGAC 179604 ||||| || || || | | ||| || || || ||||| || || || || || Sbjct 45922914 ACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 45922855 Query 179605 TCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATC 179664 | || |||| || || || ||||| ||||| || | || || |||||||| || ||| Sbjct 45922854 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATC 45922795 Query 179665 TTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTC 179724 || || ||| | ||| |||||| |||||||| || ||||||| ||| ||||| || ||| Sbjct 45922794 TTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTC 45922735 Query 179725 ATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTAT 179784 | ||| | ||| | | |||||||| | | || || ||||| || || ||||| ||| Sbjct 45922734 ACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTAT 45922675 Query 179785 GATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAG-ACGTTCTATAC 179843 || || || || || ||| | ||||| |||||||||| || ||| || ||||| || Sbjct 45922674 GACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACAC 45922615 Query 179844 AAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACA 179903 || || |||||| | || || || | ||||| ||| ||||| || ||||| || || Sbjct 45922614 CAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCA 45922555 Query 179904 TGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 |||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 45922554 TGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 45922507 Score = 279 bits (308), Expect = 6e-70 Identities = 360/497 (72%), Gaps = 0/497 (0%) Strand=Plus/Minus Query 179431 TTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATG 179490 ||| ||| | | |||||||| ||||| || || || ||||| | ||||| ||||| ||| Sbjct 13891761 TTTCGATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATG 13891702 Query 179491 ATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTA 179550 ||||||||||| || | | || | |||||||| | ||||| ||||| | || ||| Sbjct 13891701 ATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTA 13891642 Query 179551 GAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACG 179610 || || || | | |||||||| || ||||| || || || || || | || Sbjct 13891641 GAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACT 13891582 Query 179611 CAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGG 179670 |||| || || || ||||| ||||| || || ||||| |||||||| || ||||| || Sbjct 13891581 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGT 13891522 Query 179671 GTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGT 179730 ||| | ||| |||||| |||||||| || ||||||| ||| ||||| || |||| ||| Sbjct 13891521 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGT 13891462 Query 179731 CTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTT 179790 | ||| | | |||||||| | |||| || ||||| || || ||||| ||||| || Sbjct 13891461 TTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTC 13891402 Query 179791 GTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAAC 179850 || || || ||| | ||||| ||||||||||| || ||||| ||||| || || || Sbjct 13891401 GTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAAT 13891342 Query 179851 ATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAAC 179910 |||||| | || || || | ||||| ||| ||||| || ||||| || |||||||| Sbjct 13891341 ATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAAT 13891282 Query 179911 TTCATCTTCCCAGAAGA 179927 | || ||||| || || Sbjct 13891281 CTTATATTCCCTGAGGA 13891265 Score = 181 bits (200), Expect = 1e-40 Identities = 229/315 (73%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 179365 TTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCG 179424 || || || || ||||| ||||||||| ||||||||||||| || ||||| || || Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 179425 GCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTT 179484 ||||| ||| ||||| | || ||||| ||||| || || || ||||| | ||||| ||| Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 179485 CACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTA 179544 || |||||||||||||| || | | || | |||||||| | ||||||||||| | | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 179545 ACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGAC 179604 || || || || || | | ||| ||||| || ||||| || || || || || Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 179605 TCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATC 179664 | || |||| || || || ||||| ||||| || || || || |||||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 179665 TTCGGGGTTCCGTTT 179679 || || ||| | ||| Sbjct 15262456 TTTGGTGTTGCTTTT 15262442 >seq7 Length=31244610 Score = 288 bits (318), Expect = 1e-72 Identities = 358/489 (73%), Gaps = 1/489 (0%) Strand=Plus/Plus Query 178056 ATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTT 178115 ||| |||||||||| |||||||| || ||||||||||| || || |||||| | ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 178116 GCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCG 178175 ||||| |||||||| || || || ||| |||||||||||| | || || ||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 178176 CTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAA 178235 | || | || || || |||| || ||| || | ||||||| || || ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 178236 GAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATAT 178295 ||||| || ||||| || || || || |||||||| || || || || |||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 178296 GCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGA 178355 || || |||||||| ||||| | ||||||||| | || || |||||||||| || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 178356 ATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTC 178415 || |||||||| || | ||| | || ||||| || ||||| || |||||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 178416 AACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAAC 178475 ||||| || | | || | ||||| || || | || || ||||| || | ||||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 178476 CGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGA 178535 ||||| ||| || |||||||| ||||||||| | ||| || || |||||||| || || Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT-GCTCACAACTTCCCTCTAGA 14634799 Query 178536 TCTTGCAGC 178544 || || || Sbjct 14634800 CCTAGCTGC 14634808 >seq12 Length=27944835 Score = 152 bits (168), Expect = 6e-32 Identities = 201/279 (72%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 178230 CAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTC 178289 ||||| ||||| || ||||| || | | || |||||||| || || || || |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 178290 CAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTA 178349 |||||||| || |||||||| ||||| | ||||||||| | || || ||||||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 178350 GTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTC 178409 | || || |||||||| || | ||| | || ||| | || ||||| || |||||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 178410 AACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTG 178469 || || ||||| || | | || ||||| || || | || || ||||| || | Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 178470 CTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAA 178508 |||| ||||| ||| || |||||||| ||||||||| Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAA 3609938 >seq9 Length=26294017 Score = 134 bits (148), Expect = 2e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 179383 GGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTA 179442 ||||||||| |||||||||||||||| ||||| || || ||||| ||| ||||| | Sbjct 19895509 GGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATC 19895450 Query 179443 CTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCA 179502 || ||||| ||||| || || || ||||| | ||||| ||||| |||||||||||||| Sbjct 19895449 CTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 19895390 Query 179503 GGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTG 179562 || | | || | |||||||| | ||||||||||| | ||| || || || || | Sbjct 19895389 GGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTA 19895330 Query 179563 TATGAAGATGGAGA 179576 | ||| || || || Sbjct 19895329 TTTGAGGACGGTGA 19895316 >seq3 Length=38925377 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||||| || || || || | || || |||||||| || |||||||| Sbjct 37772882 TACATCCTTGATGCCGCCGAGACCGCTGGAGTGGAGCTGCCCTACTCATGCCGTGCTGGA 37772941 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| ||||||||||||||||| | | | || | || || ||||| || || Sbjct 37772942 GCATGCTCTACCTGTGCTGGTAAGATCGAGGCTGGCTCCGTCGACCAGTCGGATGGATCA 37773001 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||||||||||| || | || ||| | | | |||| ||||| | ||||| | Sbjct 37773002 TTCCTTGATGATGCGCAGCAGGAAGAAGGCTATGTGCTGACATGCGTCTCCTACCCTAAG 37773061 Query 138718 TCCGATTG 138725 ||||| || Sbjct 37773062 TCCGACTG 37773069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605667109149920