Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 2e-14 >seq3 Length=38925377 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 201567 CGTATACCAGAAATTGGAGATAAATTTTGTTCT-GGAATGGCCCAAAAAGGAACTTGTGG 201625 ||||||||| | ||||||||||| ||| || | || |||| || ||||||||| || Sbjct 27434895 CGTATACCACAGATTGGAGATAAGTTTAGTAGTAGGCATGG-TCAGAAAGGAACTGTGGG 27434953 Query 201626 TATGATTTATGCACAAGAAGATATGCCGTTTACACAATCG--GGTATGACCCCGGATATT 201683 |||| |||| ||||||| || |||||| | || || | || || || || |||||| Sbjct 27434954 AATGACTTATACACAAGAGGACATGCCG--TGGACTATTGAAGGCATCACACCTGATATT 27435011 Query 201684 ATAATCAATCCAAATTGTATACCATCAAGAATGACCATAAATCAAATAATTGCAACTGTT 201743 || | |||||| || ||| ||||| | ||||| || |||| | |||| | || Sbjct 27435012 ATTGTGAATCCACATGCTATTCCATCTCGTATGACTATTGGTCAACTGATTGAGTGTATT 27435071 Query 201744 ATGGGTAAA 201752 ||||||||| Sbjct 27435072 ATGGGTAAA 27435080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655279901708000