Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 >seq3 Length=38925377 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 192954 GATGGTTGTAGAATAGTTAAAGTTGTTATTGG-TCAGTTACGTATACCTGAAATAGGGGA 193012 ||||||| ||| | ||||| ||| || | |||||| |||||||| | || || || Sbjct 27434856 GATGGTTTAAGATTTGTTAAGGTTAGAATGCGATCAGTT-CGTATACCACAGATTGGAGA 27434914 Query 193013 TAAATTTTGTTCG-GGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAG 193071 ||| ||| || || |||| | | ||||||||| || |||| |||| ||||||| | Sbjct 27434915 TAAGTTTAGTAGTAGGCATGGTC-AGAAAGGAACTGTGGGAATGACTTATACACAAGAGG 27434973 Query 193072 ATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTC 193131 | ||||| | || | | ||| || ||| ||||||||| | |||||| || ||||| Sbjct 27434974 ACATGCCGTGGACTATTGAAGGCATCACACCTGATATTATTGTGAATCCACATGCTATTC 27435033 Query 193132 CGTCCAGAATGACCATTAATCAAATTATTGCTACTGTTATGGGTAAA 193178 | || | ||||| ||| |||| | |||| | ||||||||||| Sbjct 27435034 CATCTCGTATGACTATTGGTCAACTGATTGAGTGTATTATGGGTAAA 27435080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628531105720320