Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3 221 9e-52 seq11 111 1e-18 seq5 95.1 9e-14 seq2 89.7 4e-12 >seq3 Length=38925377 Score = 221 bits (244), Expect = 9e-52 Identities = 743/1148 (65%), Gaps = 14/1148 (1%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| ||||| || ||||||||||| || | ||||| ||| || ||||||| Sbjct 37124676 CGGCAGAAACATTCAGGATACCATTGGCGTCAATGTCAAAGCAGACAGTGATCTGAGGGA 37124617 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || || | ||||| ||||| || || | |||| | || || ||| || || Sbjct 37124616 CTCCCCTTGGGGCAGGAGGGATACCAGACAGCTCAAATTTGCCAAGGAGATTGTTGTCCC 37124557 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || | | | |||||||| | | ||||| || | | || ||||| || | Sbjct 37124556 TGGTCCGTGTCCTCTCACCCTCATAGACCTGGATCAACACACCGGGCTGGTTATCGGAGT 37124497 Query 281604 AAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 | || | || ||| || || |||||| || ||||| || || | | Sbjct 37124496 AGGTGGAGAAGACTTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCTTGGGATGAGGACAG 37124437 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | || ||||| || || | ||||||||| || ||||| ||||||| |||| || Sbjct 37124436 TCATGACTCCTCCAGCAGTCTCGAGACCAAGAGACAGTGGAGTCACATCAAGAAGGAGAA 37124377 Query 281724 TATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 || ||| | || |||| | ||| ||| |||||||| || | ||||||||| | Sbjct 37124376 GATCTTGCACCTTCTCATTCCCCTCTCCACTAAGGATAGCTGCCTGGACAGCAGCACCGT 37124317 Query 281784 ATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 281841 |||| |||||||||||||| |||| | || || |||| || |||||||| || | Sbjct 37124316 ATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTCCCATTGAAGAAGTC 37124259 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||| || ||| | || || | || ||| || ||||| | |||| || || Sbjct 37124258 CTGCAGAAGCTGCTGAACCCTGGGGATTCTAGTTGAACCACCAACGAGGACAACGTCGTG 37124199 Query 281902 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAA-ACTTTTTCAACGGGTTCAAGACCA 281959 || ||| | || |||| |||| |||| | |||| | || || | || | | Sbjct 37124198 GACG-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCACAGGCTCCATGCACT 37124140 Query 281960 GCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA 282019 | || || | || ||| || || || | ||||| || | ||| || || Sbjct 37124139 TC-CTGAAGAGATCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGATGGTGGAATAGAAA 37124081 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 |||| || || || | ||||||| |||||| |||||||| | | || || || | Sbjct 37124080 TCAACGCCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGTGGACGAGAGGGTC 37124021 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA 282139 | || || | |||||||| ||| ||||| || | || || | | | | | | | Sbjct 37124020 CTCTTTGCCCTTTCACATGATGTTCTTAGCCTCCTCAAAGCCCTGGGGTTTCCACTGATA 37123961 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199 || | |||| ||||||||||| |||| ||| | | || || || || || || Sbjct 37123960 TCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACCAGGCGGTTGTCGAAG 37123901 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 || || || || | | || | || | || ||| | || | |||| || || ||| Sbjct 37123900 TCCTCCCCACCAAGGTGGGTGTCACCGGCTGTTGCTTTCACCTCAAAAATACCCTCCTCA 37123841 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | | | || | |||||| || |||||||| | |||||||| || || ||| | Sbjct 37123840 ATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAAATGAGCACGTTCTTC 37123781 Query 282320 TCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 || | ||| || || ||||||||||| |||| |||||||| ||||| ||| Sbjct 37123780 TCACCAACACTAGTTGCCTTCTTGTCAAGACCATAAGCAATTGCAGCAGCTGTTGGCTCA 37123721 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 || || || | || |||||||||||| ||||| || ||||| || || || || || Sbjct 37123720 TTGATGATGCGCATAACATTAAGACCCGCAATAACACCGGCATCCTTGGTTGCCTGCCTC 37123661 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493 || ||||| || || || ||||||||||| | ||| |||| | || | ||| | Sbjct 37123660 TGGGAATCATTGAAGTAAGCAGGAACAGTGACAACAGCATTCTTCACAGTTGATCCTAGG 37123601 Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAA 282553 ||||| || ||| ||| || | | || ||| |||||||||| ||| | ||| Sbjct 37123600 TAAGCTTCAGCAATTTCACGCATCTTGATAAGAACCATGGATGAAATTTCTTCGGCAGAG 37123541 Query 282554 TATTGCTT 282561 |||| || Sbjct 37123540 AATTGTTT 37123533 >seq11 Length=28494620 Score = 111 bits (122), Expect = 1e-18 Identities = 523/822 (64%), Gaps = 14/822 (2%) Strand=Plus/Minus Query 281662 GGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 281721 |||||| | ||||||||| || || ||||| ||||| ||||| || ||||| | |||| Sbjct 28218685 GGTCATGACACCACCAGCAGTCTCCAAACCGAGAGAGAGAGGGGTAACATCCAACAGGAG 28218626 Query 281722 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | || | || || | | |||| || || || || || | ||||||||| Sbjct 28218625 GAGGTCCTGGACCTTCTCGTTGCCCTCACCACTCAGGATGGCAGCCTGGACAGCAGCACC 28218566 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 281841 ||| |||||||| ||||| || || | | | || | || ||||||||||| | Sbjct 28218565 ATAAGCAACAGCCTCATCTGGGTTGATGTTCTTGCAAAGCTCCTTGCCATTGAAAAAGTC 28218506 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||| || || ||| | || || | || || || ||||| | |||| ||||| Sbjct 28218505 CTGAAGGAGCTGCTGCACCCTCGGGATCCTAGTGGAACCACCAACAAGAACAACATCATG 28218446 Query 281902 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 || ||| | || |||| || | |||| | || || || || || | || Sbjct 28218445 AACA-GTGCTCTTGTCCATCTTAGCATCCCTGAGGCACTTCTCCACAGGCTCCATACACT 28218387 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA- 282019 || || | || || || || ||| | || | || | || | || || Sbjct 28218386 TCCTGAAGAGATCCATGTTGAGCTCCTCAAATCTGGCGCGGGTGATGGTTG-AGTAGAAG 28218328 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 ||||| || || | | ||||||| ||||| || || || | | || || || | Sbjct 28218327 TCAATGCCCTCATAGAGTGAATCAATCTCAATGGTGGTCTGGGCAGTGGAGGAGAGGGTC 28218268 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 | || || | ||||| |||||||| | || | | || | | | ||| | | | Sbjct 28218267 CTCTTCGCCCTCTCACAAGCTGTCCTCAACCTCCTCAGAGCCCTGG--GGTTGCCAGTGA 28218210 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 || | || | || |||||||| |||| ||| | | || | || || |||| Sbjct 28218209 TGTCCTTCTTGTTCTTCCTCTTGAACTCTTGCACAAAGTGGTTGACCATGCGGTTGTCAA 28218150 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 ||||||||||||| | | || | || | || || | || | || | || || | Sbjct 28218149 AATCTTCACCTCCAAGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCT 28218090 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | || | |||||| ||| ||||| || | ||||| || || |||||| Sbjct 28218089 CAATGGTAAGGAGGGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCT 28218030 Query 282318 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | ||| || || ||||||||||| |||| ||| || ||||| || | Sbjct 28218029 TCTCACCAACACTGGTGGCCTTCTTGTCAAGACCATAGGCAATAGCTGCGGCAGTCGGCT 28217970 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||| || || | || || || ||||||||||| ||| ||||| || ||||| || | Sbjct 28217969 CATTGATGATACGCATGACGTTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCC 28217910 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || || || || || || ||||||||||| | ||| |||| Sbjct 28217909 TCTGGGAGTCATTGAAGTAGGCAGGAACAGTGACAACAGCAT 28217868 >seq5 Length=31082981 Score = 95.1 bits (104), Expect = 9e-14 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 ||||||| || || || |||| ||||||| ||| | | |||| |||| | || Sbjct 13158548 AACATCAAATGTGCCTCCTCCCAGGTCAAAAACAAGAA---TGGTTTCATTGTTCTTCTT 13158604 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || ||| ||||| || |||| |||||||| || ||||| || || | | ||| | Sbjct 13158605 TT---CAAACCCATATGCCAAAGATGCAGCAGTGGGCTCATTTATGATACGGAGAACTTC 13158661 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 | |||||||| | || |||||||| || ||| |||||||| || || |||||||| Sbjct 13158662 CAACCCAGCAATCCGGCCAGCATCTTTTGTTGCTGTCCTTTGTGAGTCATTGAAATATGC 13158721 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTT 282482 ||| || || || || || | ||| |||| Sbjct 13158722 AGGGACTGTGATCACTGCCTTTGTGACTT 13158750 >seq2 Length=39559433 Score = 89.7 bits (98), Expect = 4e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 282355 AGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGC 282414 ||||||||||||||| ||||| || || ||| |||| ||| |||||||| | || || Sbjct 36487358 AGCAGCAGCAGTTGGCTCATTGATGATCCTCTGGACATCAAGTCCAGCAATGCGACCAGC 36487417 Query 282415 ATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 ||| || || || || | || | ||| |||||||| || ||||| ||||| ||||| Sbjct 36487418 ATCCTTGGTCGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTAATCACGGC 36487474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629810850712